PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT49862.1
Organism
Capsicum baccatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family ARF
Protein Properties Length: 844aa    MW: 93983.2 Da    PI: 6.7246
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT49862.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.32.9e-23146247199
                 EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                 f+k+lt sd++++g +++ +++a+e+      + + + +++l+ +d++g++W++++i+r++++r++l++GW+ Fv++++L +gD ++F   + +++ l+
  PHT49862.1 146 FCKTLTASDTSTHGGFSVLRRHADEClppldmSRQ-PPTQELVAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFL--RGENGDLR 241
                 99*****************************7333.34459************************************************..3488889* PP

                 EEEE-S CS
          B3  94 vkvfrk 99 
                 v+v+r+
  PHT49862.1 242 VGVRRA 247
                 ***996 PP
2Auxin_resp120.21.6e-39272354183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                 a+ha++tk++F+v+Y+Pr+s++eF+v+++++++++k+++s+GmRfkm+fe+e+++e+r++Gt+vg++d+dp rW +SkWr+Lk
  PHT49862.1 272 AWHAIQTKTMFTVYYKPRTSPAEFIVPYDHYMESVKNNYSIGMRFKMRFEGEEAPEQRFTGTIVGIEDADPRRWLESKWRCLK 354
                 89*******************************************************************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 844 aa     Download sequence    
MAASEVSIKG YNEPSDGSGQ VSETVRSSSG AGKVDAETAL YTELWRSCAG PLVTVPKEGE  60
LVYYFPQGHI EQVEASTNQV ADQQMPLYNL PSKILCRVVN VLLKAEPDTD EVYAQVTLLP  120
EPNQDENSVE KEPMRPPPPR FHVHSFCKTL TASDTSTHGG FSVLRRHADE CLPPLDMSRQ  180
PPTQELVAKD LHGNEWRFRH IFRGQPRRHL LQSGWSVFVS SKRLVAGDAF IFLRGENGDL  240
RVGVRRAMRQ QGNAPSSVIS SHSMHLGVLA TAWHAIQTKT MFTVYYKPRT SPAEFIVPYD  300
HYMESVKNNY SIGMRFKMRF EGEEAPEQRF TGTIVGIEDA DPRRWLESKW RCLKVRWDEN  360
STIPRPDRVS PWKIEPALNP PALNAPPVTR PKRPRSSILP SSPDSSVLTR EGPSRVTADL  420
SQANGFSRVL QGQELSTFRG GFAESNESDL AEKPMMWQPS MDDEKNDIHS ASKRYLSDKW  480
LPLGRPESSL TDLLSGFGVP NTSSHGFLPS ADQASFGGSF LKRQAQDQEK DFSLLGKPWS  540
LLSSSLSLNL MNSSSKAPGQ GGDNPYQMRG DARYSGYGEF SVLPGHRGDN QQGSWIMPQP  600
VSPYIQLSAR SREMMNKPTV VKQPEAVKPK EGNCKLFGIP LTSNVCTDPV MMRKSSLNDS  660
ASDMNIGIHP HQSHATDSDQ RSEQSKGSKV DNDHDKQFHA FHIASRERDG KGHSSSTRSC  720
TKVHKQGTAL GRSVDLAKFN NYDELIAELD QLFDFNGELK ARSKSWLVVY TDDEGDMMLV  780
GDDPWQEFCG MVRKIFIYTK EEVQRMNPGT LNSKGEDTSS VAEGSDAKEG KNLHLPSESG  840
QEES
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62000.30.0ARF family protein