PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PHT49843.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 211aa MW: 25067.5 Da PI: 8.7916 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 61.1 | 1.7e-19 | 56 | 109 | 4 | 57 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 ++++++eq++ Le+ F ++++ +e++ +LA++lgL+ qV vWFqNrRa++k+ PHT49843.1 56 KRKLSEEQVNLLERSFGDEHKLETERKDKLASELGLDPHQVAVWFQNRRARWKN 109 45899***********************************************95 PP | |||||||
2 | HD-ZIP_I/II | 112.5 | 2.8e-36 | 55 | 145 | 2 | 92 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 +kr+ls+eqv+lLE+sF e+kLe+erK +la+eLgl+p+qvavWFqnrRAR+k+k+lE++y++Lk ++++ e+ rLe+ev +++e+l PHT49843.1 55 RKRKLSEEQVNLLERSFGDEHKLETERKDKLASELGLDPHQVAVWFQNRRARWKNKKLEEEYSKLKIQHETTIIEKYRLETEVLKMKEQLC 145 8**************************************************************************************9986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 211 aa Download sequence |
MTGRKVDDQM ILISHQFYPH IYVQLKQDLQ EETVKPRRRK NKKRDGNNNT SVVVRKRKLS 60 EEQVNLLERS FGDEHKLETE RKDKLASELG LDPHQVAVWF QNRRARWKNK KLEEEYSKLK 120 IQHETTIIEK YRLETEVLKM KEQLCQAEKQ IQRLLFERNC DISSNSPTSS IFSMEQPQFN 180 LGEFGMEGLL MDNNVFFVGD NQRTYATLCD N |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 36 | 40 | PRRRK |
2 | 37 | 45 | RRRKNKKRD |
3 | 37 | 58 | RRRKNKKRDGNNNTSVVVRKRK |
4 | 38 | 59 | RRRKNKKRDGNNNTSVVVRKRK |
5 | 42 | 63 | RRRKNKKRDGNNNTSVVVRKRK |
6 | 55 | 84 | RKRKLSEEQVNLLERSFGDEHKLETERKDK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36740.1 | 3e-53 | HD-ZIP family protein |