PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT49620.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

HSF

Protein Properties

Length: 402aa MW: 45753.5 Da PI: 4.8392

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT49620.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	108.9	3.8e-34	14	105	2	102
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 F+ k+ye+++d++++ ++sws+n++sf+v ++ fa+++Lp+yFkh+nf+SF+RQLn+YgFkk++ e+ weF+++ F +g+ +ll++i PHT49620.1 14 FIAKIYEMVDDPSTDPIVSWSSNNKSFIVRNPPVFARDLLPRYFKHNNFSSFIRQLNTYGFKKIDPEQ---------WEFANDDFLRGQPHLLKNIY 101 9*************************************************************9998.........****************** PP XXXX CS HSF_DNA-bind 99 rkks 102 r+k PHT49620.1 102 RRKP 105 *985 PP

Sequence ? help Back to Top
Protein Sequence Length: 402 aa Download sequence
MDEAPCSTNA LPPFIAKIYE MVDDPSTDPI VSWSSNNKSF IVRNPPVFAR DLLPRYFKHN 60 NFSSFIRQLN TYGFKKIDPE QWEFANDDFL RGQPHLLKNI YRRKPVHSHS AQNTHSVSSA 120 LTESERHGYK EDIEKLKREN ELLHSELNRH KQDHQGLETQ TQVLTERVQQ VKDRQKNVLF 180 TLARVINKPG LALSLMPQLE MNERKRRLPG NTFLYNETGL QDNQPSSSEN STRENTEPTS 240 LLTLNKEALD QLESSLTNWE HILYDTDQDA VRRSSSMDLD ESISCADSPA MSYPQLTVDV 300 GSKVSGIDMN SEPNGNATPD VTPPENRVET ASNVPTGVND VFWEQFLTEN PGSTTDVKAE 360 TEDTESKISE SKTVENGKFW WDTKTVNSLT EQLEHLTPAD RS

Sequence ? help Back to Top

Protein Sequence Length: 402 aa Download sequence

MDEAPCSTNA LPPFIAKIYE MVDDPSTDPI VSWSSNNKSF IVRNPPVFAR DLLPRYFKHN  60
NFSSFIRQLN TYGFKKIDPE QWEFANDDFL RGQPHLLKNI YRRKPVHSHS AQNTHSVSSA  120
LTESERHGYK EDIEKLKREN ELLHSELNRH KQDHQGLETQ TQVLTERVQQ VKDRQKNVLF  180
TLARVINKPG LALSLMPQLE MNERKRRLPG NTFLYNETGL QDNQPSSSEN STRENTEPTS  240
LLTLNKEALD QLESSLTNWE HILYDTDQDA VRRSSSMDLD ESISCADSPA MSYPQLTVDV  300
GSKVSGIDMN SEPNGNATPD VTPPENRVET ASNVPTGVND VFWEQFLTEN PGSTTDVKAE  360
TEDTESKISE SKTVENGKFW WDTKTVNSLT EQLEHLTPAD RS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	203	208	ERKRRL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G18880.1	1e-107	HSF family protein