PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PHT49555.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 181aa MW: 20937.7 Da PI: 7.6023 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 34.6 | 2.5e-11 | 15 | 58 | 1 | 44 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44 k+ie + r +tfskRr g+ KKA+EL d++ +++ s+t PHT49555.1 15 KKIEKYVDRCTTFSKRRSGLYKKASELVRENDVDLGIVLTSPTE 58 689************************99999999999999875 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 181 aa Download sequence |
MDGKKTAGRQ KIPLKKIEKY VDRCTTFSKR RSGLYKKASE LVRENDVDLG IVLTSPTEAE 60 KVYSFIHPTH YAVIDRFMNP TQEFDLGEHL VAENTRKKVN QLNDRLNELD RREKNAKDRM 120 TSLSEMNKTR EKSRWESIDQ LNADDIMKFE AWLDIGEVML KDQLREASSS SSQSPPVDAD 180 I |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04100.1 | 6e-20 | M-type_MADS family protein |