PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT49294.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

MYB

Protein Properties

Length: 399aa MW: 43329.3 Da PI: 5.4464

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT49294.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	50.7	4.1e-16	78	123	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 + +W+ eEd+ l ++++++G ++W+ Ia+ ++ gR++k+c++rw + PHT49294.1 78 KEPWSREEDLVLMELINKFGARNWSMIAQGIP-GRSGKSCRLRWCNQ 123 679***************************.*********985 PP
2	Myb_DNA-binding	56.8	5.1e-18	130	174	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r+++T eEd ++++a++ +G++ W++Ia+ ++ gRt++ +k++w++ PHT49294.1 130 RKPFTDEEDRIIINAHAVHGNK-WASIAKLLP-GRTDNAIKNHWNST 174 789*****************.*****.*********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 399 aa Download sequence
MNENAEKSNF SAVAVTFDGG DAVLHGGGSV GNGGNASVDG GDAVLHGGNG GDDFVDDGGD 60 VEMSESGRGN RVSSGRVKEP WSREEDLVLM ELINKFGARN WSMIAQGIPG RSGKSCRLRW 120 CNQLDPLLKR KPFTDEEDRI IINAHAVHGN KWASIAKLLP GRTDNAIKNH WNSTLRRRFA 180 ELWRVKPLCS VMLDDSIDNA KVLFEEIKSH GNFNQIKPLE MLEGSRAECM SSQSEDKTQI 240 YEIYDIPEKS PNFVSERSCS TSVENSDPSA SRPTEKIGGF YVCNPSATSR IVPMQGPLIH 300 TFSPDFDICK LLEGCVSAGE TTVPQGCGHG CCAASTNSSF KSSLLGPEFV EYEEHPPHLG 360 HELASIATDL NSIAWIRSGL EKAGELRNSR HSSTQVGFG

Sequence ? help Back to Top

Protein Sequence Length: 399 aa Download sequence

MNENAEKSNF SAVAVTFDGG DAVLHGGGSV GNGGNASVDG GDAVLHGGNG GDDFVDDGGD  60
VEMSESGRGN RVSSGRVKEP WSREEDLVLM ELINKFGARN WSMIAQGIPG RSGKSCRLRW  120
CNQLDPLLKR KPFTDEEDRI IINAHAVHGN KWASIAKLLP GRTDNAIKNH WNSTLRRRFA  180
ELWRVKPLCS VMLDDSIDNA KVLFEEIKSH GNFNQIKPLE MLEGSRAECM SSQSEDKTQI  240
YEIYDIPEKS PNFVSERSCS TSVENSDPSA SRPTEKIGGF YVCNPSATSR IVPMQGPLIH  300
TFSPDFDICK LLEGCVSAGE TTVPQGCGHG CCAASTNSSF KSSLLGPEFV EYEEHPPHLG  360
HELASIATDL NSIAWIRSGL EKAGELRNSR HSSTQVGFG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G55730.1	1e-89	MYB family protein