PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT49082.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

C2H2

Protein Properties

Length: 381aa MW: 43837.4 Da PI: 8.3815

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT49082.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	20.6	1.2e-06	58	80	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++C+ sF r nL+ H r+H PHT49082.1 58 YVCEICNLSFQREQNLQMHRRRH 80 9*********************9 PP
2	zf-C2H2	16.5	2.4e-05	145	166	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 C++C+k + +s++k Hi+t+ PHT49082.1 145 ICQKCNKGYAVQSDYKAHIKTC 166 7*******************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 381 aa Download sequence
MLASHSFLFG APSNYSDQFS SPENGFIIKR KRRPAGTPDP DAQVVYLTAE MLMESDRYVC 60 EICNLSFQRE QNLQMHRRRH KVPWKLKKKR DQEEEKNEMD QVIKKRVYVC PEPSCVHHDP 120 CHALGDLVGI KKHFRRKHSN YKQWICQKCN KGYAVQSDYK AHIKTCGTRG HSCDCGRVFS 180 RVETFIEHQD SCKPQSSTTT TTTKECHDVQ TTNPIFLPTT TTTTHHPHDQ YSRILPNLDL 240 ELFTSPNYNN QNTNYYSPFE QQNEHTPQSN MSSFVGQSHD NYIVQNNEAK NIIEEATTQV 300 SRLKSEANEI LKIVMEEKAM AAEKRQDAKC LIELANLEMA KAREITQSII GSSSSSHVMK 360 IIKCSSCTNL SNYLSSSIYR R

Sequence ? help Back to Top

Protein Sequence Length: 381 aa Download sequence

MLASHSFLFG APSNYSDQFS SPENGFIIKR KRRPAGTPDP DAQVVYLTAE MLMESDRYVC  60
EICNLSFQRE QNLQMHRRRH KVPWKLKKKR DQEEEKNEMD QVIKKRVYVC PEPSCVHHDP  120
CHALGDLVGI KKHFRRKHSN YKQWICQKCN KGYAVQSDYK AHIKTCGTRG HSCDCGRVFS  180
RVETFIEHQD SCKPQSSTTT TTTKECHDVQ TTNPIFLPTT TTTTHHPHDQ YSRILPNLDL  240
ELFTSPNYNN QNTNYYSPFE QQNEHTPQSN MSSFVGQSHD NYIVQNNEAK NIIEEATTQV  300
SRLKSEANEI LKIVMEEKAM AAEKRQDAKC LIELANLEMA KAREITQSII GSSSSSHVMK  360
IIKCSSCTNL SNYLSSSIYR R

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	29	34	KRKRRP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68130.1	1e-101	C2H2 family protein