PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT48945.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

WRKY

Protein Properties

Length: 301aa MW: 33966.9 Da PI: 6.8846

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT48945.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	106.9	1.1e-33	89	146	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK+vkg+++prsYY+CtsagC v+k+ver+++d k v++tYeg+Hnhe PHT48945.1 89 EDGYRWRKYGQKVVKGNPNPRSYYKCTSAGCLVRKHVERASDDLKSVITTYEGKHNHE 146 8********************************************************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 301 aa Download sequence
MLSNNLKSMN VFESDATHEL SSTLNSFDDE DEDLATQEGN FLGDGINEFE FEPKRRKKES 60 YSVEPSLLSR TVREPKVVLQ VESETDILED GYRWRKYGQK VVKGNPNPRS YYKCTSAGCL 120 VRKHVERASD DLKSVITTYE GKHNHEVPSA NKTNGVAGHF RSASMLNNGQ QQPACTASRK 180 SLKDSTIRVQ FQDLPIPFER KFFMGSEYLR PNFGSSYLSD LSFGGGSLQL PDFAIPLPLP 240 SRMSFPARQN EPRLGDFQMN NHLLLPNGAS TFLAAGNTRH INDDNNNSRL LKAKDEVQYW 300 T

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	53	59	PKRRKKE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56270.1	3e-44	WRKY family protein