PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT48818.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

bHLH

Protein Properties

Length: 388aa MW: 43912.4 Da PI: 4.993

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT48818.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	38.2	2.6e-12	166	217	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ + Lr+l+P + + ++ + a+i A+e++++L+ PHT48818.1 166 QRMTHIAVERNRRKQMNEHLRVLRSLMPGS---YVQRGDQASIIGGAIEFVRELE 217 79**************************...9***************9995 PP

Sequence ? help Back to Top
Protein Sequence Length: 388 aa Download sequence
MVIGETSSNT NNQMVDYMLN PHSIQQQQQQ QQQQNQSLLG FLPSNSSLDK LSFADVMQFA 60 DFGPKLALNQ TKVVSEEDAG GIDPVYFLKF PVLNEKNVHE DDGDDDDDQE GLMIQQSDQE 120 KFKLVVDQEG GKEKSENVIV VERGHEGKNN KRKRPRIKTN EEVESQRMTH IAVERNRRKQ 180 MNEHLRVLRS LMPGSYVQRG DQASIIGGAI EFVRELEQLL QCLESQKRRR IYGDNSTPPT 240 RPLGDSSNIQ PPQPQPMPIN QNPSSTHNHQ PPLLLPLPNE YIEAGIQEEI AESKSCLADV 300 EVKLLGFDAM IKILSRRRPG QLIKAIASLE DMQLSILHTN ITTIEQTVLY TFNVKISGET 360 RYTANDIANS IQQIFSFIHA EIAPYDIN

Sequence ? help Back to Top

Protein Sequence Length: 388 aa Download sequence

MVIGETSSNT NNQMVDYMLN PHSIQQQQQQ QQQQNQSLLG FLPSNSSLDK LSFADVMQFA  60
DFGPKLALNQ TKVVSEEDAG GIDPVYFLKF PVLNEKNVHE DDGDDDDDQE GLMIQQSDQE  120
KFKLVVDQEG GKEKSENVIV VERGHEGKNN KRKRPRIKTN EEVESQRMTH IAVERNRRKQ  180
MNEHLRVLRS LMPGSYVQRG DQASIIGGAI EFVRELEQLL QCLESQKRRR IYGDNSTPPT  240
RPLGDSSNIQ PPQPQPMPIN QNPSSTHNHQ PPLLLPLPNE YIEAGIQEEI AESKSCLADV  300
EVKLLGFDAM IKILSRRRPG QLIKAIASLE DMQLSILHTN ITTIEQTVLY TFNVKISGET  360
RYTANDIANS IQQIFSFIHA EIAPYDIN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	167	178	RMTHIAVERNRR
2	227	231	KRRRI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24140.1	1e-111	bHLH family protein