PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT48725.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

MYB

Protein Properties

Length: 237aa MW: 28000.8 Da PI: 9.9115

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT48725.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	61.4	1.9e-19	13	60	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT eEd+ll+++v+++G g+W+++ar g++R +k+c++rw +yl PHT48725.1 13 KGPWTVEEDKLLIEYVNLHGEGRWNSVARLAGLKRNGKSCRLRWVNYL 60 79********************************************97 PP
2	Myb_DNA-binding	47.2	5e-15	69	110	4	47
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 T+ E+ +++++++ +G++ W+tIar ++ gRt++++k++w+++ PHT48725.1 69 ITPYEERIILELHAIWGNR-WSTIARSLP-GRTDNEIKNYWRTH 110 6899*************.*****.**********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 237 aa Download sequence
MGRWGIIEEE WRKGPWTVEE DKLLIEYVNL HGEGRWNSVA RLAGLKRNGK SCRLRWVNYL 60 RPDLKREQIT PYEERIILEL HAIWGNRWST IARSLPGRTD NEIKNYWRTH FKKKVKKSST 120 DNFEKTKARL LKRQQSQQKQ LLNSQIDMKR VMSQNENKVP SHVPKQDMAI LYQNNSFHEQ 180 EQSGFFYSMN NGYAIVPEAS SNEDIMWDIG LWNLDDFNVN LPVSAVESGF AIKEFKI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24310.1	7e-77	MYB family protein