PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT48682.1
Organism
Capsicum baccatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family GRAS
Protein Properties Length: 508aa    MW: 58367 Da    PI: 6.1668
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT48682.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS288.81.5e-881325061374
        GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetsekn..sseelaalklfsevsPilkfshl 96 
                 lve Ll+ Ae vs+++  +a+++L++  + +s++g+p++Rla yf +AL+ r+ r ++   +k + +++  +++    +   ++ + ++  P+ +++++
  PHT48682.1 132 LVENLLASAEKVSQKQYDRARRILNECDKFCSNTGNPVHRLAYYFSQALRDRIDRdTGRDSSKDIGMNRLVPMEhlLMNLDLSMIAAHQNIPLSQVTQF 230
                 5789***************************************************777888888866555555544333333344478899******** PP

        GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp....egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlel 191
                 +  qaI + v ++++vHiiD+di+ G+QW  L+qaL + +    ++  +lRiT++     + ++++e t+erL +fA +l++pf+fn+++++++ +l+ 
  PHT48682.1 231 AGVQAIINHVGESKKVHIIDLDIGCGMQWTILMQALYTHQcgceSSLKHLRITALCT---KLRHKIEDTRERLMDFAVSLNLPFSFNIVMVEDVLKLKQ 326
                 *************************************99988877788*******99...57999********************************** PP

        GRAS 192 eeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErell 290
                 e+++++ +Ea+a+   + l+r+l+++ +l+s    +++++++++P+ ++v+e ea+hns+ F++rf+eal +y a+fdsle  +  ++++r+ +E e l
  PHT48682.1 327 EDFEIDDEEAIAIFARYILMRMLAQPDKLDS----LMRVIRGINPRAMIVIEVEANHNSPAFVDRFVEALFFYGAFFDSLEDCMRYDERNRTAIESEHL 421
                 ***********************88888888....**************************************************************** PP

        GRAS 291 greivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                 +r i+++va+eg+er+ rh ++  Wr  + + G+++++ls +   qa+l+l++++ +   ++e ++++l++gWk+ pL+s+SaW+
  PHT48682.1 422 SRGIRSIVATEGEERTIRHVKVDVWRTFFARYGMEEMELSMSSLYQANLVLKNFAcGSCCTLEMNKNCLLIGWKGTPLISLSAWK 506
                 *******************************************************9999*************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 508 aa     Download sequence    
MFHFDQSELN SSESNEMNLD YDFVSLDKWD FNVIPLQHQS NVDETKKNSG SKLPSAFKIL  60
KEYDTIRFKR SKTDKKIITN SECIKLSVDE ILRLGAEKFI QSCTIHGDRE AYMLFASSFL  120
GLSEDDTRNV ALVENLLASA EKVSQKQYDR ARRILNECDK FCSNTGNPVH RLAYYFSQAL  180
RDRIDRDTGR DSSKDIGMNR LVPMEHLLMN LDLSMIAAHQ NIPLSQVTQF AGVQAIINHV  240
GESKKVHIID LDIGCGMQWT ILMQALYTHQ CGCESSLKHL RITALCTKLR HKIEDTRERL  300
MDFAVSLNLP FSFNIVMVED VLKLKQEDFE IDDEEAIAIF ARYILMRMLA QPDKLDSLMR  360
VIRGINPRAM IVIEVEANHN SPAFVDRFVE ALFFYGAFFD SLEDCMRYDE RNRTAIESEH  420
LSRGIRSIVA TEGEERTIRH VKVDVWRTFF ARYGMEEMEL SMSSLYQANL VLKNFACGSC  480
CTLEMNKNCL LIGWKGTPLI SLSAWKLS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03450.18e-55GRAS family protein