PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PHT48653.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 197aa MW: 22658 Da PI: 8.6185 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 42.1 | 1.1e-13 | 17 | 58 | 9 | 49 |
HHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT.SEEEEE CS SRF-TF 9 rqvtfskRrngilKKAeELSvLCdaevaviifsst.gklyey 49 ++ t+ kR + + KKA+ELS+LCd+ev +i fs+ + ++ + PHT48653.1 17 KKATLEKRFQSLCKKAKELSILCDIEVGIIAFSHAeNDIFAW 58 5789*****************************851455555 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 197 aa Download sequence |
MTKKGVRTTR NLDSKIKKAT LEKRFQSLCK KAKELSILCD IEVGIIAFSH AENDIFAWPS 60 IIQAIDRVKN YLACVETKKP VKFQKHETYL QSIVDAQEKY IDQIEQKVEK MEMENLFREL 120 VNARKRFDEL EDREIKEASL NLLGATEEAD GPSDKRRTLA QTIAMRQKTD SLAKCDEEGR 180 RTIGLAMDHR TPPSQLS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06500.1 | 5e-18 | M-type_MADS family protein |