PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT48606.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

MYB_related

Protein Properties

Length: 602aa MW: 69157.4 Da PI: 8.6939

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT48606.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	31.3	4.8e-10	487	537	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 r+ W+t E ++lv++v ++G g+W+ I +++ +R++ ++k++wq++l PHT48606.1 487 RKYWSTREVLKLVEGVSEYGVGRWNDIKKMFFqssMRRSPVDLKDKWQNLL 537 678*************************99999************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 602 aa Download sequence
MLAQEIISGI NKLVVSGNMV IKIAVAKAYD MVYWYYTFLV LRRFGFGEIL IDILWRTLSN 60 NWYFVLVNAT RHGFFHSTRG LKQDDPPSPA LFIFGDKVLL RALNTLHHHP QYYGFHMERH 120 DPHINHLSFA DDIIIFTTGI RQTLRLQMRI LASYEEFLDG LSNGDDENHC FISCEDYLLD 180 IELEEDTPTL HDVTRDISCV ESVILENQLV DSVGRNCGIH VLTLSGASSS SDHDAMIIDN 240 FDCMSTDKRL MVSREMLGHK TPVADNQWLK PHMIVGLENQ EISEKNFSFP KCSLDSSENQ 300 GANVPPASCR NLLTVSTAFA SIFTFRRKPR VQHVKRREHI QWNSFKCLSS VAGEIQLDCP 360 DKWDSKESAE ENVKCCGMKP GISEQCLKCK PSRRGFGRRY YRRGATVTSQ GLGKRNFQVG 420 FDQLIRRERQ LSKDCKANRA HDDNIHSAEA QNDPSGTLSD QSSDDTSEDD WTIGCETRGT 480 NKDRKHRKYW STREVLKLVE GVSEYGVGRW NDIKKMFFQS SMRRSPVDLK DKWQNLLRAS 540 CRRLQSRRGV DAKMKRRMRS IPRTVLNHVR NLAVIYPYSR QRRSRISSTE SLASSNVKSD 600 NH

Sequence ? help Back to Top

Protein Sequence Length: 602 aa Download sequence

MLAQEIISGI NKLVVSGNMV IKIAVAKAYD MVYWYYTFLV LRRFGFGEIL IDILWRTLSN  60
NWYFVLVNAT RHGFFHSTRG LKQDDPPSPA LFIFGDKVLL RALNTLHHHP QYYGFHMERH  120
DPHINHLSFA DDIIIFTTGI RQTLRLQMRI LASYEEFLDG LSNGDDENHC FISCEDYLLD  180
IELEEDTPTL HDVTRDISCV ESVILENQLV DSVGRNCGIH VLTLSGASSS SDHDAMIIDN  240
FDCMSTDKRL MVSREMLGHK TPVADNQWLK PHMIVGLENQ EISEKNFSFP KCSLDSSENQ  300
GANVPPASCR NLLTVSTAFA SIFTFRRKPR VQHVKRREHI QWNSFKCLSS VAGEIQLDCP  360
DKWDSKESAE ENVKCCGMKP GISEQCLKCK PSRRGFGRRY YRRGATVTSQ GLGKRNFQVG  420
FDQLIRRERQ LSKDCKANRA HDDNIHSAEA QNDPSGTLSD QSSDDTSEDD WTIGCETRGT  480
NKDRKHRKYW STREVLKLVE GVSEYGVGRW NDIKKMFFQS SMRRSPVDLK DKWQNLLRAS  540
CRRLQSRRGV DAKMKRRMRS IPRTVLNHVR NLAVIYPYSR QRRSRISSTE SLASSNVKSD  600
NH

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	570	583	RNLAVIYPYSRQRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72650.1	2e-17	MYB_related family protein