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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | PHT48438.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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| Family | HD-ZIP | ||||||||
| Protein Properties | Length: 323aa MW: 36787.2 Da PI: 4.3627 | ||||||||
| Description | HD-ZIP family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | Homeobox | 57.7 | 1.9e-18 | 61 | 113 | 4 | 56 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
+++++ +q+++Le+ Fe ++++ e++ +LA++lgL+ rqV +WFqNrRa++k
PHT48438.1 61 KRRLKVDQVKALEKNFEVDNKLEPERKVKLAQELGLQPRQVAIWFQNRRARWK 113
347899**********************************************9 PP
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| 2 | HD-ZIP_I/II | 124.6 | 4.5e-40 | 59 | 148 | 1 | 90 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90
e+krrl+ +qvk+LE++Fe ++kLeperKv+la+eLglqprqva+WFqnrRAR+ktkqlE+dy++Lk+++d+lk++ e+L++++e+L +e
PHT48438.1 59 ERKRRLKVDQVKALEKNFEVDNKLEPERKVKLAQELGLQPRQVAIWFQNRRARWKTKQLERDYNVLKANFDSLKHNYESLQHDNEALLKE 148
69***********************************************************************************99765 PP
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| Sequence ? help Back to Top |
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| Protein Sequence Length: 323 aa Download sequence |
MKRTRSTDSL GAPLMSMCQN TTDDQNHWNN HIYSRDFQSM LEGLDDETTC IEESGFGSER 60 KRRLKVDQVK ALEKNFEVDN KLEPERKVKL AQELGLQPRQ VAIWFQNRRA RWKTKQLERD 120 YNVLKANFDS LKHNYESLQH DNEALLKENS ELKSKLHGGN NETKLAVKEE AFESEIDDKE 180 LEQSNNPNNN NSNPELNFEN CFFNDGNGIA LESLSDSDSS AILNDDNSPN TTIISSSGAF 240 VITSNVGSGS SSPNSNNSSL NCFQFLDSNL EHDVDVPMKF VKLEEYNFFS GEESCSTLFT 300 DEQAPTLHWY CPGDMSIEEE FFV |
| Nucleic Localization Signal ? help Back to Top | |||
|---|---|---|---|
| No. | Start | End | Sequence |
| 1 | 59 | 64 | ERKRRL |
| 2 | 60 | 89 | RKRRLKVDQVKALEKNFEVDNKLEPERKVK |
| 3 | 108 | 116 | RRARWKTKQ |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT4G40060.1 | 8e-54 | HD-ZIP family protein | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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