PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT48366.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

ARF

Protein Properties

Length: 1095aa MW: 120926 Da PI: 6.3353

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT48366.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	62	9.4e-20	135	236	1	99
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 f+k+lt sd++++g +++p++ ae++ +++++ ++l+ +d++ + W++++ yr++++r++lt+GW+ v+ ++L +gD+v+F +d++++f + PHT48366.1 135 FCKTLTASDTSTHGGFSVPRRAAEKIfppldySLQPPA-QELVARDLHDNIWTFRHVYRGQPKRHLLTTGWSLVVSGKRLFAGDSVLFIRDEKHQF--L 230 99***************************9777766.49**********************************************6554555..9 PP EEEE-S CS B3 94 vkvfrk 99 ++++++ PHT48366.1 231 LGIRKA 236 998875 PP
2	Auxin_resp	114.2	1.2e-37	261	344	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+++s+F+v+YnPra++ eFv++++k+ ka++ ++vs+GmRf+m+fete+s +rr++Gt++g+sdldpvrW+nS+Wr+L+ PHT48366.1 261 AAHAAANNSPFTVFYNPRAGPFEFVIPLAKYYKATYsSQVSLGMRFRMMFETEESGTRRYMGTITGISDLDPVRWKNSQWRNLQ 344 79*****************************99879******************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 1095 aa Download sequence
MKMPANGAGA QVASAYAANP SEGEKKTINP ELWQACAGPL VNLPVAGTHV VYFPQGHSEQ 60 VAASIKKDVE AQIPNYPNLP SKLICLLHNV TLHADPETDE VYAQMTLQPV PSFDKEALLR 120 SDLSMKANKP QPEFFCKTLT ASDTSTHGGF SVPRRAAEKI FPPLDYSLQP PAQELVARDL 180 HDNIWTFRHV YRGQPKRHLL TTGWSLVVSG KRLFAGDSVL FIRDEKHQFL LGIRKANRQP 240 TNLSSSVLSS DSMHIGILAA AAHAAANNSP FTVFYNPRAG PFEFVIPLAK YYKATYSSQV 300 SLGMRFRMMF ETEESGTRRY MGTITGISDL DPVRWKNSQW RNLQVGWDES TAGERINRVS 360 IWEIEPITAP FLICSSPFFS SKRPRQPGMP DGDYSDVDGM FKRTMPFLGD DFGMTDPQGL 420 PGFSLIQWMN MQKNPSPANP MLPNYLNSLP GSALQNLAGA DLSRQLGLAA PQFQQQHNLQ 480 FNTHRTNQQG QQLDQLQKLP GATLNPLDSI MQSQQQLSDV SQQPGQNLTN QSLPTTQVHT 540 QHPQGQNLVQ SQNVLPPQQS IQNQLQRNLP QSLPQQQILS QTQQQSFMTS QTQDPVNQQQ 600 HFSDNQAQIQ LLQKLHQHQK SLLAQQSALQ QPSQLGPIQD HQKQLLDVSQ NFSRSPATNQ 660 MLDASQTMST SLSHSQVVQQ QMARINSPSN LRFSEPTQQL KLQQQQSGNL SDLSGPVNYS 720 VPRTTYQLPT NGSNLTITAR GGQSVVTDDV VPSCSTSVST NNCYNVVQPN MNGRITGARD 780 ETTHCSGPLE VLSANINLQQ KSDVKPSVNV VSKSQNHGFV APQTLNTSGL QFDYLDCSSS 840 ATSACLSQND VQLQQTTTDP LSCSSQPVIF RDSPDGGEVQ GDPRNNVAFG AANMENNQLG 900 LPMIPDPLIT KSSVGSRKDF SDNLSSGGGM LSSYENRKEA QPELLASMAS EYITFNSIDS 960 TINDGNFMDR GAWEPPPQLP RLRTFTKVYK RGAVGRSIDI ARYSGYEELK LDLARRFGIE 1020 GQLEDRQRIG WKLVYVDHEN DVLLVGDDPW EEFVSCVRCI KILSPQEVQQ MSLDGDFGGS 1080 VLQNQDCSSS DAGDV

Sequence ? help Back to Top

Protein Sequence Length: 1095 aa Download sequence

MKMPANGAGA QVASAYAANP SEGEKKTINP ELWQACAGPL VNLPVAGTHV VYFPQGHSEQ  60
VAASIKKDVE AQIPNYPNLP SKLICLLHNV TLHADPETDE VYAQMTLQPV PSFDKEALLR  120
SDLSMKANKP QPEFFCKTLT ASDTSTHGGF SVPRRAAEKI FPPLDYSLQP PAQELVARDL  180
HDNIWTFRHV YRGQPKRHLL TTGWSLVVSG KRLFAGDSVL FIRDEKHQFL LGIRKANRQP  240
TNLSSSVLSS DSMHIGILAA AAHAAANNSP FTVFYNPRAG PFEFVIPLAK YYKATYSSQV  300
SLGMRFRMMF ETEESGTRRY MGTITGISDL DPVRWKNSQW RNLQVGWDES TAGERINRVS  360
IWEIEPITAP FLICSSPFFS SKRPRQPGMP DGDYSDVDGM FKRTMPFLGD DFGMTDPQGL  420
PGFSLIQWMN MQKNPSPANP MLPNYLNSLP GSALQNLAGA DLSRQLGLAA PQFQQQHNLQ  480
FNTHRTNQQG QQLDQLQKLP GATLNPLDSI MQSQQQLSDV SQQPGQNLTN QSLPTTQVHT  540
QHPQGQNLVQ SQNVLPPQQS IQNQLQRNLP QSLPQQQILS QTQQQSFMTS QTQDPVNQQQ  600
HFSDNQAQIQ LLQKLHQHQK SLLAQQSALQ QPSQLGPIQD HQKQLLDVSQ NFSRSPATNQ  660
MLDASQTMST SLSHSQVVQQ QMARINSPSN LRFSEPTQQL KLQQQQSGNL SDLSGPVNYS  720
VPRTTYQLPT NGSNLTITAR GGQSVVTDDV VPSCSTSVST NNCYNVVQPN MNGRITGARD  780
ETTHCSGPLE VLSANINLQQ KSDVKPSVNV VSKSQNHGFV APQTLNTSGL QFDYLDCSSS  840
ATSACLSQND VQLQQTTTDP LSCSSQPVIF RDSPDGGEVQ GDPRNNVAFG AANMENNQLG  900
LPMIPDPLIT KSSVGSRKDF SDNLSSGGGM LSSYENRKEA QPELLASMAS EYITFNSIDS  960
TINDGNFMDR GAWEPPPQLP RLRTFTKVYK RGAVGRSIDI ARYSGYEELK LDLARRFGIE  1020
GQLEDRQRIG WKLVYVDHEN DVLLVGDDPW EEFVSCVRCI KILSPQEVQQ MSLDGDFGGS  1080
VLQNQDCSSS DAGDV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G19220.1	0.0	ARF family protein