PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT48044.1
Organism
Capsicum baccatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family MYB
Protein Properties Length: 311aa    MW: 33670.4 Da    PI: 8.8922
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT48044.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding315.7e-101153444
                     S-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  4 WTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                     W+ e d+ + +a + ++ +   +W++Ia  ++  +tl+++k+++
       PHT48044.1 11 WSREQDKAFENALATYPEDsadRWEKIATDVP-EKTLEEVKHHY 53
                     ********************************.9*********9 PP
2Myb_DNA-binding41.92.3e-13121165347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT++E+ l++ +  ++G+g+W++I+r +  +Rt+ q+ s+ qky
       PHT48044.1 121 AWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKY 165
                      6*******************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    
MTIDESSSSI WSREQDKAFE NALATYPEDS ADRWEKIATD VPEKTLEEVK HHYDLLLEDV  60
SRIESGSVPL PCYNSSSDSS TSHGGDDGTG KKTGNSGNLN GESNHGGKST RADQERRKGI  120
AWTEDEHRLF LLGLDKYGKG DWRSISRNFV VTRTPTQVAS HAQKYFIRLN SMNRDRRRSS  180
IHDITSVNTG EVSVPPGPIT GQANGSSAGS SSSKPNKQQT PVRATPLGVS IYGETSIGQP  240
IGGPFVSAVG TPVNLPPPTH MEYGVLPPIP GAVVPGAPKN VGPLTYPMPH TSMHRRSQIQ  300
VLKITFGKNA R
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.11e-101MYB family protein