PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT47978.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

C2H2

Protein Properties

Length: 1028aa MW: 114542 Da PI: 6.9748

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT47978.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.5	0.00091	937	960	2	23
EET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCp..dCgksFsrksnLkrHirtH 23 +Cp C k F+++ + ++H+r+H PHT47978.1 937 RCPieGCEKKFTSHKYAQVHQRVH 960 69999*****************99 PP
2	zf-C2H2	11.3	0.0011	996	1022	1	23
EEET..TTTEEESSHHHHHHHHHH..T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt..H 23 ykC+ Cg +F+ s++ rH r+ H PHT47978.1 996 YKCKveGCGLTFRFVSDYSRHRRKtgH 1022 99*********************9777 PP

Sequence ? help Back to Top
Protein Sequence Length: 1028 aa Download sequence
MICTKYADEG SIGNNLSTSS EVVVLVCTAT LYPPQTPLCG NTLGFNCGEA ANFGTPQWLA 60 VAKEAAVRRA AMNYLPMLSH QQLLYLLTMS FVSSVPRSLL PGVRSSRMRG RQKEEREFLV 120 KKAFIEDIEK ESNLVEVLLQ KSFADNAMLW DVDMLPSSGK ESGLHKHVSA DASRGNSQSD 180 NDSQDLLDQM SLYMENYSDF YVDDDVSCEF EIDSGTLPCI ACGILGFPFM ALVQPSDKSA 240 KHLFPEDFQN KQEPGVLKHV ESDSHSDHRG MLEDYNGVDR IGRNGVHSLN QDEVSLYAQP 300 SESAVSPHEG QTSQSHHLSH TDNAVLTSKV DFEKECDVSR GLVRPRIFCL EHAIQTEELL 360 RTKGGANVLV ICHSDFQKIR GHAAIVAEEI DTTYKYNEIP LANASQGHLS LIDLAMRDEE 420 QGKCAEDWTL KLNINLRHCV KVQRNCPLKK LKHALILGGL FSDTTRSSDS LSPLKWQSRK 480 VRSKRKLNNS TESTPFANVQ IEKVVDSGST VDMQNTRNRN IRIQYSRKKY KRKACSFVDP 540 FNDSKEVLLA DAKTLGSTLH RDENAGTTSV AGRFVAASDG KPLLRHEHEM LLLNRDQNGN 600 LLAPQEADLL VTTSLVVELD EAQAEICTTE KFSLENKTCI TNSSTCHTEN KTTAAETSGE 660 TEITHVHVVQ STAYNEKLEE NRDMTESVIR GKCAQLMEAD FERDYHSGDD KAIMTRSLVP 720 VNCSGCCTDG PSRSCDAKIE DQVSEQFGSG SEASDSETSH KSVEQEIQID NSVKDIAVSD 780 HVTPIEEASA SAGSLKMTTK TSKIKHSQSG NGISEQDKKE SNEDTSAIVL RLTGKSGGKR 840 SELDLLTNDG RSVGGFAKSP CEGLRPRARK NVPGSRVDTK ELLEKKSMGN KVRRSLHSSI 900 SPKDKKEQRK GAHRCNLEGC WMSFQTKVEL QLHKHNRCPI EGCEKKFTSH KYAQVHQRVH 960 ENDRPLKCPW KGCTMTFKWA WARTEHLRVH TGERPYKCKV EGCGLTFRFV SDYSRHRRKT 1020 GHYVDAVN

Sequence ? help Back to Top

Protein Sequence Length: 1028 aa Download sequence

MICTKYADEG SIGNNLSTSS EVVVLVCTAT LYPPQTPLCG NTLGFNCGEA ANFGTPQWLA  60
VAKEAAVRRA AMNYLPMLSH QQLLYLLTMS FVSSVPRSLL PGVRSSRMRG RQKEEREFLV  120
KKAFIEDIEK ESNLVEVLLQ KSFADNAMLW DVDMLPSSGK ESGLHKHVSA DASRGNSQSD  180
NDSQDLLDQM SLYMENYSDF YVDDDVSCEF EIDSGTLPCI ACGILGFPFM ALVQPSDKSA  240
KHLFPEDFQN KQEPGVLKHV ESDSHSDHRG MLEDYNGVDR IGRNGVHSLN QDEVSLYAQP  300
SESAVSPHEG QTSQSHHLSH TDNAVLTSKV DFEKECDVSR GLVRPRIFCL EHAIQTEELL  360
RTKGGANVLV ICHSDFQKIR GHAAIVAEEI DTTYKYNEIP LANASQGHLS LIDLAMRDEE  420
QGKCAEDWTL KLNINLRHCV KVQRNCPLKK LKHALILGGL FSDTTRSSDS LSPLKWQSRK  480
VRSKRKLNNS TESTPFANVQ IEKVVDSGST VDMQNTRNRN IRIQYSRKKY KRKACSFVDP  540
FNDSKEVLLA DAKTLGSTLH RDENAGTTSV AGRFVAASDG KPLLRHEHEM LLLNRDQNGN  600
LLAPQEADLL VTTSLVVELD EAQAEICTTE KFSLENKTCI TNSSTCHTEN KTTAAETSGE  660
TEITHVHVVQ STAYNEKLEE NRDMTESVIR GKCAQLMEAD FERDYHSGDD KAIMTRSLVP  720
VNCSGCCTDG PSRSCDAKIE DQVSEQFGSG SEASDSETSH KSVEQEIQID NSVKDIAVSD  780
HVTPIEEASA SAGSLKMTTK TSKIKHSQSG NGISEQDKKE SNEDTSAIVL RLTGKSGGKR  840
SELDLLTNDG RSVGGFAKSP CEGLRPRARK NVPGSRVDTK ELLEKKSMGN KVRRSLHSSI  900
SPKDKKEQRK GAHRCNLEGC WMSFQTKVEL QLHKHNRCPI EGCEKKFTSH KYAQVHQRVH  960
ENDRPLKCPW KGCTMTFKWA WARTEHLRVH TGERPYKCKV EGCGLTFRFV SDYSRHRRKT  1020
GHYVDAVN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04240.1	9e-57	C2H2 family protein