PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT47852.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

WRKY

Protein Properties

Length: 550aa MW: 61158.2 Da PI: 8.3102

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT47852.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	96.1	2.4e-30	234	293	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK kg+++pr+YYrCt a +Cpv+k+v+r+ +d ++++itYeg+Hnh+ PHT47852.1 234 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVApSCPVRKQVQRCIQDMSILIITYEGTHNHP 293 58*************************99**************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 550 aa Download sequence
MEASFKKSNI HGHVFKVEKI NADDKGFVED TKVLKFSKKR ELHEDHKSKS SQLQKDYLTS 60 DKEDDQLESA KADMEEVMEE NQRLKKHLDR VMKDYQNLQM QFHEISQRGV EKSNNVKHDE 120 AELVSLTLGR TSSDTKIELS KILNKKENVE EEDNLTLGLD CKFQSSANAP TKSPPSNLSP 180 ENSLGEVKDE KGTETWPAHK GLKTIRDEED DVVQQNPIKR AKVSVRIRCD TPTMNDGCQW 240 RKYGQKIAKG NPCPRAYYRC TVAPSCPVRK QVQRCIQDMS ILIITYEGTH NHPLPLSATS 300 MAFTTSAAAS MLLSGSSTSE SGSTSTSTSA ISNALNYYLS NTSKPNPFYL PNSSISSSLH 360 SQHPTITLDL TSNSSTSSFP NNHRMPRYNN NSSTNILNFS SFESNPVLPM SWSNANNQAY 420 NNKNQEIPSQ SYLQNNISAA PTQTLLQQDT ISAATKAITS DPKFQSALAV ALTSIIGSRG 480 ANRHIDEKSG KDLKVNEPFP VLCSFPSTTT SSIKCSPNNT QPEKSLFMRE STSSVQFTAS 540 KTKSHKDYTL

Sequence ? help Back to Top

Protein Sequence Length: 550 aa Download sequence

MEASFKKSNI HGHVFKVEKI NADDKGFVED TKVLKFSKKR ELHEDHKSKS SQLQKDYLTS  60
DKEDDQLESA KADMEEVMEE NQRLKKHLDR VMKDYQNLQM QFHEISQRGV EKSNNVKHDE  120
AELVSLTLGR TSSDTKIELS KILNKKENVE EEDNLTLGLD CKFQSSANAP TKSPPSNLSP  180
ENSLGEVKDE KGTETWPAHK GLKTIRDEED DVVQQNPIKR AKVSVRIRCD TPTMNDGCQW  240
RKYGQKIAKG NPCPRAYYRC TVAPSCPVRK QVQRCIQDMS ILIITYEGTH NHPLPLSATS  300
MAFTTSAAAS MLLSGSSTSE SGSTSTSTSA ISNALNYYLS NTSKPNPFYL PNSSISSSLH  360
SQHPTITLDL TSNSSTSSFP NNHRMPRYNN NSSTNILNFS SFESNPVLPM SWSNANNQAY  420
NNKNQEIPSQ SYLQNNISAA PTQTLLQQDT ISAATKAITS DPKFQSALAV ALTSIIGSRG  480
ANRHIDEKSG KDLKVNEPFP VLCSFPSTTT SSIKCSPNNT QPEKSLFMRE STSSVQFTAS  540
KTKSHKDYTL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15130.1	2e-60	WRKY family protein