PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT47811.1
Organism
Capsicum baccatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family MYB_related
Protein Properties Length: 354aa    MW: 39821.4 Da    PI: 7.2103
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT47811.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.72.3e-1270111346
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      ++T++E+el++++++  G++ W+ Ia+ +  gRt++++k+ w++
       PHT47811.1  70 SFTPQEEELIIKLHATIGSR-WSIIAQQLA-GRTDNDVKNLWNT 111
                      79******************.*********.**********997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    
MGRPPCCNDK VHNRKCNWIE DDSNTSTYVS TKHGIGNWAT MSKKSGYERC GRIQKQRWSN  60
RLKPDLKQDS FTPQEEELII KLHATIGSRW SIIAQQLAGR TDNDVKNLWN TKLKKKLSAM  120
GIDPVTHKPF SQILTDYGNI GGFPKARTRF VSLNRELKGA FMSRPEQLRH SLLSFQNFHS  180
LCVKLPKTEA SEECFFSNNR DSSNVNQPPV DLLSELQAIK YVTEASNYNS PKARFSHHPN  240
QMTDCSTSSP LSSSSSSSAS HSLNENQVNW CDYLLDDAFI PSNFKDQEDA LTIEEKLVSS  300
AQDGSNNVPS TRDFQASLST KGTSSSSSSF VEAMLECENE MFLNFPGLSE DPFY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28470.12e-46MYB family protein