PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT47544.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

C3H

Protein Properties

Length: 291aa MW: 32405.6 Da PI: 9.4718

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT47544.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	19.3	1.9e-06	135	156	4	25
---SGGGGTS--TTTTT-SS-S CS zf-CCCH 4 elCrffartGtCkyGdrCkFaH 25 Cr+far+ C+yG C+F H PHT47544.1 135 LVCRYFARGNGCPYGHECQFFH 156 57****99********87 PP
2	zf-CCCH	35.3	1.9e-11	201	226	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 kt+lC ++ rtG C yG++C+FaHgp PHT47544.1 201 KTRLCYRWERTGRCCYGSSCQFAHGP 226 9***********************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 291 aa Download sequence
MSRLVNNLQI SSKHEEYKKG QPDTLKELSL CKGSEKGANQ KGLLCYSDKR CGFNSDADEC 60 VSLNLKKPRA KNSRMAQEGS KSNVPKCNQF TRWGSCALGE KCRYVHATGG GGNAYGLLPS 120 QAIGVEQAGN LGKMLVCRYF ARGNGCPYGH ECQFFHEGGE RRESAAITIV TNDGGNEGRK 180 RTQSEMKEYR DSAEFLRKKL KTRLCYRWER TGRCCYGSSC QFAHGPAELQ GVGPSNPQPL 240 GSSVGVSAPT KKVTSNEFVR PYRKKFPFDW DNVYKNAEVY GDWIELPPRP K

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	179	201	RKRTQSEMKEYRDSAEFLRKKLK
2	196	202	LRKKLKT
3	197	203	RKKLKTR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19360.1	6e-15	C3H family protein