PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT47459.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

AP2

Protein Properties

Length: 365aa MW: 41187.4 Da PI: 6.7274

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT47459.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	35.5	2.5e-11	52	108	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d ++n ++k+ + g ++ + Aa a++ a++k++g PHT47459.1 52 SIYRGVTRHRWTGRYEAHLWDkNCWNEsQNKKGRQGAYDDEAAAAHAYDLAALKYWG 108 57*****************99998898888888*99***********98 PP
2	AP2	51.2	3.1e-16	151	202	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV +++ +grW+A+I + g +k+ +lg++ t eeAa a++ a+ +++g PHT47459.1 151 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAATAYDMAAIEYRG 202 89**99******99966...3.6***********************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 365 aa Download sequence
MAKTSSKSNQ KNTAAATGSS SSSKKSDNNA IIGKPKRTRK SVPRDSPPQR SSIYRGVTRH 60 RWTGRYEAHL WDKNCWNESQ NKKGRQGAYD DEAAAAHAYD LAALKYWGQD TILNFPVETY 120 EKELKEMEDQ SKEEYIGSLR RKSSGFSRGV SKYRGVARHH HNGRWEARIG RVFGNKYLYL 180 GTYATQEEAA TAYDMAAIEY RGLNAVTNFD LSRYIKWLRP SDQTDNITSN NPTEPNPNPN 240 TDDIHLLPNT KEDMSFNFLQ QQQQQQQSPC ADANVTALPA GGAAATSALG LLLQSSKFKE 300 MLERTTVVES PETPPEPDRP RRSFPDDIQT YFDGQESSSF MEEHDIIFGD LDSLTLPMFQ 360 CELDS

Sequence ? help Back to Top

Protein Sequence Length: 365 aa Download sequence

MAKTSSKSNQ KNTAAATGSS SSSKKSDNNA IIGKPKRTRK SVPRDSPPQR SSIYRGVTRH  60
RWTGRYEAHL WDKNCWNESQ NKKGRQGAYD DEAAAAHAYD LAALKYWGQD TILNFPVETY  120
EKELKEMEDQ SKEEYIGSLR RKSSGFSRGV SKYRGVARHH HNGRWEARIG RVFGNKYLYL  180
GTYATQEEAA TAYDMAAIEY RGLNAVTNFD LSRYIKWLRP SDQTDNITSN NPTEPNPNPN  240
TDDIHLLPNT KEDMSFNFLQ QQQQQQQSPC ADANVTALPA GGAAATSALG LLLQSSKFKE  300
MLERTTVVES PETPPEPDRP RRSFPDDIQT YFDGQESSSF MEEHDIIFGD LDSLTLPMFQ  360
CELDS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G16060.1	2e-89	AP2 family protein