PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT47422.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

MYB

Protein Properties

Length: 1031aa MW: 115314 Da PI: 8.308

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT47422.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	22.3	3e-07	331	428	1	47
TSSS-HHHHHHHHHHHHHTTTT...................................................-HHHHHHHHTTTS-HHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg...................................................tWktIartmgkgRtlkqcksr 43 r+ W++eE e l+++vkq + +W+ +a++ gR++ +c+sr PHT47422.1 331 RKDWSKEESENLAKGVKQQFQEmllqrsvnlpvnllsdedgcsresgdlddviasirdhkitpetmrsfipevNWDQVASMYLPGRSGGECQSR 424 788**************999******************************************************9888****** PP HHHH CS Myb_DNA-binding 44 wqky 47 w+++ PHT47422.1 425 WLNW 428 98 PP
2	Myb_DNA-binding	25.8	2.4e-08	438	480	4	46
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 W E++ l+++v+q + +W Ia+ +g Rt+ qc s++q PHT47422.1 438 WDLSEEKNLLQVVQQKRMSNWVDIAASLGVSRTPFQCLSHYQR 480 9999*************************************96 PP
3	Myb_DNA-binding	43.1	1e-13	488	532	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg WT eEd +l av+ +G +W +a+ + gRt+ qc +rw k PHT47422.1 488 RGDWTDEEDSRLCAAVETFGESNWQVVASVIE-GRTGTQCSNRWIK 532 899***************************.*********87 PP
4	Myb_DNA-binding	38.9	2e-12	542	600	2	47
SSS-HHHHHHHHHHHHHTTTT..............-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg..............tWktIartmgkgRtlkqcksrwqky 47 g+W+++Ed++l+ av ++ ++ Wk++a++++ gRt qc++rw + PHT47422.1 542 GKWSADEDKRLKVAVMLFYPKcwrnigqsvpwrtpVWKKVAQYVP-GRTHVQCRERWVNT 600 89***************99********************.*********987 PP
5	Myb_DNA-binding	51.5	2.3e-16	609	651	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 WT+eEd++l+ a++++G W+++a++++ Rt++qc+ rw + PHT47422.1 609 EWTEEEDLKLKSAINEHGYS-WSKVAACVP-SRTDNQCRRRWMVL 651 7***************99.*****.*********865 PP

Sequence ? help Back to Top
Protein Sequence Length: 1031 aa Download sequence
MAFDSDDDDF SGTDSDEGFQ ADMEALKKAC LLSGKDADDL QPSSSSDDGH VAGANDVTLS 60 DTDADEDEDD DFELVRSIQE RFALSTEVHD PISMKPLCSI LPPGSEGDED DDFETLRVIQ 120 RRFTAYGDDN GNGRGGSLFD KFEQVGVTNI TSEKETSNNL FVETTNAEEG FPACVDRTIQ 180 ISEECSNDVA RSKNLTDGHD SGAETTAISV NSSRFPKSAH AFVDAIKKNR ACQKLIREKM 240 MQTEARLEEL KKLKERVKIL KSFQLTCKKK MGRALSQKRD ARVQLISLPK QRFSAKLPGK 300 KLSAIHSGPP ENSHVASFKE ALTQFAVSLS RKDWSKEESE NLAKGVKQQF QEMLLQRSVN 360 LPVNLLSDED GCSRESGDLD DVIASIRDHK ITPETMRSFI PEVNWDQVAS MYLPGRSGGE 420 CQSRWLNWED PLIKHEGWDL SEEKNLLQVV QQKRMSNWVD IAASLGVSRT PFQCLSHYQR 480 SLNASIIRGD WTDEEDSRLC AAVETFGESN WQVVASVIEG RTGTQCSNRW IKSLHPARRR 540 CGKWSADEDK RLKVAVMLFY PKCWRNIGQS VPWRTPVWKK VAQYVPGRTH VQCRERWVNT 600 LDPSLKLDEW TEEEDLKLKS AINEHGYSWS KVAACVPSRT DNQCRRRWMV LFPDEVPMLK 660 EAKKKRREAF ISNFVDREEE RPALKPNDIV LAHKLSKAGC ETTTANKKRK RRPRTAKDDK 720 TPKCDAVREM EKQHSEGSEG PESSDLINNQ ESDKILDGEE AVEQGCNDAR KNKRRSRRHP 780 RNTKKVKPND KVPEASASSA GESTVADDNI CKRRRRTSSL VKKKSRTIAS ASITVDSTIA 840 DGNSCKRRQR TSSQVKKKSS DKNARQLETS AVPGTLGGGT SGASVRHKLN KCNRLKNDDR 900 SCVGNLPETA DDCMTLASFV RKSRAKGCSL SFTKVARLHP DKAQGKAMAG DHSSRSCISG 960 GHDETEKRTS QECTSSNQIS GTEVGDDMPL SLFMGKVKKE KIEVGDDMPL AFFLGKVKRG 1020 QPSGAQDRKR K

Sequence ? help Back to Top

Protein Sequence Length: 1031 aa Download sequence

MAFDSDDDDF SGTDSDEGFQ ADMEALKKAC LLSGKDADDL QPSSSSDDGH VAGANDVTLS  60
DTDADEDEDD DFELVRSIQE RFALSTEVHD PISMKPLCSI LPPGSEGDED DDFETLRVIQ  120
RRFTAYGDDN GNGRGGSLFD KFEQVGVTNI TSEKETSNNL FVETTNAEEG FPACVDRTIQ  180
ISEECSNDVA RSKNLTDGHD SGAETTAISV NSSRFPKSAH AFVDAIKKNR ACQKLIREKM  240
MQTEARLEEL KKLKERVKIL KSFQLTCKKK MGRALSQKRD ARVQLISLPK QRFSAKLPGK  300
KLSAIHSGPP ENSHVASFKE ALTQFAVSLS RKDWSKEESE NLAKGVKQQF QEMLLQRSVN  360
LPVNLLSDED GCSRESGDLD DVIASIRDHK ITPETMRSFI PEVNWDQVAS MYLPGRSGGE  420
CQSRWLNWED PLIKHEGWDL SEEKNLLQVV QQKRMSNWVD IAASLGVSRT PFQCLSHYQR  480
SLNASIIRGD WTDEEDSRLC AAVETFGESN WQVVASVIEG RTGTQCSNRW IKSLHPARRR  540
CGKWSADEDK RLKVAVMLFY PKCWRNIGQS VPWRTPVWKK VAQYVPGRTH VQCRERWVNT  600
LDPSLKLDEW TEEEDLKLKS AINEHGYSWS KVAACVPSRT DNQCRRRWMV LFPDEVPMLK  660
EAKKKRREAF ISNFVDREEE RPALKPNDIV LAHKLSKAGC ETTTANKKRK RRPRTAKDDK  720
TPKCDAVREM EKQHSEGSEG PESSDLINNQ ESDKILDGEE AVEQGCNDAR KNKRRSRRHP  780
RNTKKVKPND KVPEASASSA GESTVADDNI CKRRRRTSSL VKKKSRTIAS ASITVDSTIA  840
DGNSCKRRQR TSSQVKKKSS DKNARQLETS AVPGTLGGGT SGASVRHKLN KCNRLKNDDR  900
SCVGNLPETA DDCMTLASFV RKSRAKGCSL SFTKVARLHP DKAQGKAMAG DHSSRSCISG  960
GHDETEKRTS QECTSSNQIS GTEVGDDMPL SLFMGKVKKE KIEVGDDMPL AFFLGKVKRG  1020
QPSGAQDRKR K

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	645	667	RRRWMVLFPDEVPMLKEAKKKRR
2	663	667	KKKRR
3	707	712	KKRKRR
4	708	713	KRKRRP
5	770	778	RKNKRRSRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18100.1	1e-163	MYB family protein