PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT47298.1
Organism
Capsicum baccatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family NF-YA
Protein Properties Length: 290aa    MW: 32276.9 Da    PI: 9.5796
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT47298.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA103.42.1e-32133189158
   CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                 dep++VNaKQyq+Il+RRq Rakle+++kl +k+rkpylheSRh+hAl+R+Rg+gGrF
  PHT47298.1 133 DEPIFVNAKQYQAILRRRQYRAKLEAQNKL-SKARKPYLHESRHRHALNRARGPGGRF 189
                 79****************************.**************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    
MQQMSTFPGP QNSKELNFRS QDQDSSSTQS TSQSCPEVAN EGERKIHGKG IMALQAGSFR  60
SSGKSDDFLC VSNQEHGWTY HTCQKNSAVA PFPHPDPFYH GLVSSYGNPT MVQSQMLGTV  120
SPRVPLPVDL QQDEPIFVNA KQYQAILRRR QYRAKLEAQN KLSKARKPYL HESRHRHALN  180
RARGPGGRFV NKKKPQESKF PDLINGQDDQ VPEHELQLNT KMLELDVHQS GSYKGSSSTP  240
VYSSIASGSN SATIYHHQPL KYSAFSSCIG GTSQQNKEKD HISNPGLSSF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72830.11e-42NF-YA family protein