PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT47255.1
Organism
Capsicum baccatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family GRAS
Protein Properties Length: 577aa    MW: 63624 Da    PI: 5.2554
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT47255.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS437.78.4e-1342025721374
        GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                 lv++L++cAea+++++++la+alL+++  la +++ +m+++a yf+ AL+++++r    ly   pps+ ++   ++ l +   f+e++P+lkf+h+taN
  PHT47255.1 202 LVHTLMACAEAIQQEEMKLADALLKQIAFLAVSQAGAMRKVAMYFAYALERKIYR----LY---PPSNPNDFAFTDLLEM--HFYETCPYLKFAHFTAN 291
                 689****************************************************....66...4444443334555444..5**************** PP

        GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg....skeeleetgerLakfAeelgvpfefnvlvakrledleleeL 194
                 qaIlea++++++vH+iDf+++qG+QWpaLlqaLa Rp+gpps+R+Tg+g+p+++    ++e l+e+g+rL ++Ae+++v+fef+ +va++++dl+ + +
  PHT47255.1 292 QAILEAFANKTKVHVIDFSMKQGMQWPALLQALALRPSGPPSFRLTGIGPPSHDnnsnNAEHLQEVGWRLGQLAESIKVEFEFRGFVANSMADLNASIF 390
                 ***************************************************999999999*************************************** PP

        GRAS 195 rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleak.....lpreseerikvEre 288
                 ++++gE++aVn++++lh+ll++++ +e+     L++vk+l+P++++vveqea+hn++ F +rf+e+l+yys+lfdsle +     l++ s++++ ++++
  PHT47255.1 391 DIREGETVAVNSIFELHQLLARPGGIEK----GLSVVKDLKPDIFTVVEQEANHNGPVFIDRFTESLHYYSTLFDSLEGGsgggeLGPVSDQDKLMSEV 485
                 ***************************9....*********************************************9886777788889********* PP

        GRAS 289 llgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                 +lgr+i+n+v+c g +r+erhetl++Wr+r+++aGF+pv+l+++a kqa++ll+ ++ + gyrvee++g+l+lgW++rpL+++SaW+
  PHT47255.1 486 YLGRQICNLVSCDGVDRVERHETLAQWRRRFNTAGFEPVHLGSNAFKQASMLLALFAgGCGYRVEENNGCLMLGWHTRPLIATSAWK 572
                 *********************************************************99***************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 577 aa     Download sequence    
MKRDKTMPCD QRTFSGKGKM MKEEEQDGGG VDELLAVLGY KVKESDMAEV AQKLEQLERV  60
MGNVQQDNLT FLASDTVHYN PSDLSTWIQS MISELNPQHP FTPNNHPSSL TPPPPQVYDD  120
DSSFDSDLTA IPGKAVFPQI DGPLLNPQSK RFKPSTTEVS SSSSSSSSIC IWGGGGGGGG  180
LRPAELTRPV VLTDSQDNGV RLVHTLMACA EAIQQEEMKL ADALLKQIAF LAVSQAGAMR  240
KVAMYFAYAL ERKIYRLYPP SNPNDFAFTD LLEMHFYETC PYLKFAHFTA NQAILEAFAN  300
KTKVHVIDFS MKQGMQWPAL LQALALRPSG PPSFRLTGIG PPSHDNNSNN AEHLQEVGWR  360
LGQLAESIKV EFEFRGFVAN SMADLNASIF DIREGETVAV NSIFELHQLL ARPGGIEKGL  420
SVVKDLKPDI FTVVEQEANH NGPVFIDRFT ESLHYYSTLF DSLEGGSGGG ELGPVSDQDK  480
LMSEVYLGRQ ICNLVSCDGV DRVERHETLA QWRRRFNTAG FEPVHLGSNA FKQASMLLAL  540
FAGGCGYRVE ENNGCLMLGW HTRPLIATSA WKLNSVC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01570.10.0GRAS family protein