PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT47156.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

bHLH

Protein Properties

Length: 416aa MW: 46697.4 Da PI: 6.3798

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT47156.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	23.6	9.1e-08	168	215	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR +iN+++ L++++P + k + a +L + ++Y++sLq PHT47156.1 168 SHSLAERVRRGKINERLRCLQDIVPGC----YKTMGMAGMLDEIINYVQSLQ 215 8***********************8....355999999*****99998 PP

Sequence ? help Back to Top
Protein Sequence Length: 416 aa Download sequence
MADHQFTSDI QNCITNNSPF PLSNFDSSID FMNQFPDMMT IPCSSDMSSF NLHSSLEFSH 60 ENIFNQVAEF PGNLQEIFQG NFQQGDAKIN AMENNLPRND NINESKKRKK IDTPESSSAY 120 SSPAVSATGT KRRNSKGRGN KVKSNEKEEE KPSDVVHVRA KRGQATDSHS LAERVRRGKI 180 NERLRCLQDI VPGCYKTMGM AGMLDEIINY VQSLQNQVEF LSMKLTAASS YYDFNSESDI 240 LVALQRAKAY EALKMQKMKK EIGCEELSSN QVGPYDHNFG KQNNTLFMKN HEAGPTGSAP 300 FPKVNVVAVH DQPEISQNYY RDRGRGHGRE CGRGRGRGRN NYRHNGGNKQ ENNKGSQNNP 360 SKSKVNICHQ CGDDDEAAPS NTNDDVEANL TYNDDDFKGL SDITHLKAED FYDDID

Sequence ? help Back to Top

Protein Sequence Length: 416 aa Download sequence

MADHQFTSDI QNCITNNSPF PLSNFDSSID FMNQFPDMMT IPCSSDMSSF NLHSSLEFSH  60
ENIFNQVAEF PGNLQEIFQG NFQQGDAKIN AMENNLPRND NINESKKRKK IDTPESSSAY  120
SSPAVSATGT KRRNSKGRGN KVKSNEKEEE KPSDVVHVRA KRGQATDSHS LAERVRRGKI  180
NERLRCLQDI VPGCYKTMGM AGMLDEIINY VQSLQNQVEF LSMKLTAASS YYDFNSESDI  240
LVALQRAKAY EALKMQKMKK EIGCEELSSN QVGPYDHNFG KQNNTLFMKN HEAGPTGSAP  300
FPKVNVVAVH DQPEISQNYY RDRGRGHGRE CGRGRGRGRN NYRHNGGNKQ ENNKGSQNNP  360
SKSKVNICHQ CGDDDEAAPS NTNDDVEANL TYNDDDFKGL SDITHLKAED FYDDID

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	106	110	KKRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18400.1	1e-58	bHLH family protein