PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT46904.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

C3H

Protein Properties

Length: 688aa MW: 74885.9 Da PI: 6.5587

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT46904.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	21.7	3.5e-07	277	297	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f++ GtC++ d C +aHg PHT46904.1 277 PCPDFRK-GTCQRADACEYAHG 297 8****.***********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 688 aa Download sequence
MCSGSGSRVC SADLAMEAKI QDQKELVPNF SLLLELSASD DIRNFQKAVE EEGHDINEVG 60 LWYVRKVGVK KMGYEERTPL MVAATFGSKQ VLNYILEKGC VDVNQTCGSD RATALHCAIV 120 GGSSALPEVV KLLLDASADA NLVDADGKRA VDLFSSRGRC LNSRRKILEH LLGGNSGDEG 180 EGSGCIDQII SEQAEEQLLL TPTVSKFGSE KKEYPVDPSL PDIKNGIYGT DDFRMYIFKV 240 KPCSRAYSHD WTECPFVHPG ENARRRDPSK YHYSCVPCPD FRKGTCQRAD ACEYAHGIFE 300 CWLHPAQYRT RMCKDETNCN RRVCFFAHKP GELRPLYPST GSAVLSPRSY SNGTTSLDIS 360 SITPLALGSP SVMMPPTSTP PMSPSAGASS VGGSLWPGQS SHSTPTLQLP ISRLKTSINA 420 RHMELGNGYL RQDQLMDDLS ALSSPSRWNG SSAKAAMFAT SFNDLNGELG RHGGLEPTNL 480 DDMLATLDSK ILSQLQGLSL DAVSPHLQSP KGMQMRQNMN QQHMTSYSSG QSSPSFRTSS 540 SYGIDASSAA ATAALSSRSA AFAKRSQSFI DRSAVGRLSN ASAMPSNLSG WGSPDGKLDW 600 GIQKDELNKL RKSASFGLRN SGNRFPTNEG SVSDSSVESD VSWVQPLDSP ARQLAMEDQQ 660 YRLNASRGSE ATPTWVDQLY MEQEQIVH

Sequence ? help Back to Top

Protein Sequence Length: 688 aa Download sequence

MCSGSGSRVC SADLAMEAKI QDQKELVPNF SLLLELSASD DIRNFQKAVE EEGHDINEVG  60
LWYVRKVGVK KMGYEERTPL MVAATFGSKQ VLNYILEKGC VDVNQTCGSD RATALHCAIV  120
GGSSALPEVV KLLLDASADA NLVDADGKRA VDLFSSRGRC LNSRRKILEH LLGGNSGDEG  180
EGSGCIDQII SEQAEEQLLL TPTVSKFGSE KKEYPVDPSL PDIKNGIYGT DDFRMYIFKV  240
KPCSRAYSHD WTECPFVHPG ENARRRDPSK YHYSCVPCPD FRKGTCQRAD ACEYAHGIFE  300
CWLHPAQYRT RMCKDETNCN RRVCFFAHKP GELRPLYPST GSAVLSPRSY SNGTTSLDIS  360
SITPLALGSP SVMMPPTSTP PMSPSAGASS VGGSLWPGQS SHSTPTLQLP ISRLKTSINA  420
RHMELGNGYL RQDQLMDDLS ALSSPSRWNG SSAKAAMFAT SFNDLNGELG RHGGLEPTNL  480
DDMLATLDSK ILSQLQGLSL DAVSPHLQSP KGMQMRQNMN QQHMTSYSSG QSSPSFRTSS  540
SYGIDASSAA ATAALSSRSA AFAKRSQSFI DRSAVGRLSN ASAMPSNLSG WGSPDGKLDW  600
GIQKDELNKL RKSASFGLRN SGNRFPTNEG SVSDSSVESD VSWVQPLDSP ARQLAMEDQQ  660
YRLNASRGSE ATPTWVDQLY MEQEQIVH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58620.1	1e-172	C3H family protein