PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT46897.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

MYB

Protein Properties

Length: 468aa MW: 52695.2 Da PI: 7.3223

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT46897.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55.5	1.3e-17	118	164	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT eEd +l+++vkq+G + W+ Ia++mg R +kqc++rw+++l PHT46897.1 118 KGQWTDEEDSKLLRLVKQFGVRKWAQIAEKMG-ARAGKQCRERWHNHL 164 799***************************.***********97 PP
2	Myb_DNA-binding	57	4.6e-18	170	212	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 ++ W++eE++llv+++k+lG++ W+ Ia++++ gRt++ +k++w+ PHT46897.1 170 KDTWSEEEELLLVELHKLLGNK-WAEIAKRIP-GRTENAIKNHWN 212 679*****************.*****.*********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 468 aa Download sequence
MDGESAFLRY QNLPKNNHPP FTAIDRFLLS HENYFPQQKS NENALGEFSH FVGANASSNR 60 YANGISWPTL PEPTYMEELF VNEVHKNNGL LGHEQKNKTK ESGKKTKEGN STTNYLIKGQ 120 WTDEEDSKLL RLVKQFGVRK WAQIAEKMGA RAGKQCRERW HNHLRPDIKK DTWSEEEELL 180 LVELHKLLGN KWAEIAKRIP GRTENAIKNH WNATKRRQNS RRNKNKKTQQ ADGTQCENKS 240 HRSTVLQDYI RSKYFMNDDN SPLTATLSYG SGGTGSGGGY SPSTTTVIGS TSNATNATPT 300 YSDDDSPYLI THQTYDEEMN FMQSLFGNSN IINGTKVMGT METNVVTQDL LDKSSSSSSF 360 GLNSSGENPL AQCNVESYTT TKRVIADNNA RNYIPDYSQY YPQDLYLSRL LDGSLVPNYS 420 DCFECGSMNN QAGCSSSGGN IKEVDLMEMM NSTNSQFSQP GTFNKTFF

Sequence ? help Back to Top

Protein Sequence Length: 468 aa Download sequence

MDGESAFLRY QNLPKNNHPP FTAIDRFLLS HENYFPQQKS NENALGEFSH FVGANASSNR  60
YANGISWPTL PEPTYMEELF VNEVHKNNGL LGHEQKNKTK ESGKKTKEGN STTNYLIKGQ  120
WTDEEDSKLL RLVKQFGVRK WAQIAEKMGA RAGKQCRERW HNHLRPDIKK DTWSEEEELL  180
LVELHKLLGN KWAEIAKRIP GRTENAIKNH WNATKRRQNS RRNKNKKTQQ ADGTQCENKS  240
HRSTVLQDYI RSKYFMNDDN SPLTATLSYG SGGTGSGGGY SPSTTTVIGS TSNATNATPT  300
YSDDDSPYLI THQTYDEEMN FMQSLFGNSN IINGTKVMGT METNVVTQDL LDKSSSSSSF  360
GLNSSGENPL AQCNVESYTT TKRVIADNNA RNYIPDYSQY YPQDLYLSRL LDGSLVPNYS  420
DCFECGSMNN QAGCSSSGGN IKEVDLMEMM NSTNSQFSQP GTFNKTFF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58850.1	9e-52	MYB family protein