PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT46745.1
Organism
Capsicum baccatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family GRAS
Protein Properties Length: 409aa    MW: 47365.6 Da    PI: 8.7028
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT46745.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS307.92.3e-946040521374
        GRAS  21 qalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdi 119
                 ++ L+ ++ ++ p+g++++R+a+yf+ AL+arla+++ ely+a++ ++ +    ++ l+a+++++       +s++ a + I   + +++ +HiiDf+i
  PHT46745.1  60 HEKLKLIRLHRLPYGEATERMAHYFADALEARLAGTGIELYEAFAKRTIT---AADILKAFQVYV-----TALSNIFAGESIGMLTREATSIHIIDFGI 150
                 6789999999**********************************999998...899999999986.....579************************** PP

        GRAS 120 sqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrllde 216
                  +G+QWp+++q ++  p+gpp+lRiTg++ p++g   +e++eetg+rLak++++++vpfe+n+ +ak++++++l++L++++gE+l+Vn+ ++l +++de
  PHT46745.1 151 LYGFQWPCFIQGISLGPSGPPKLRITGIDFPQPGfrPAERVEETGRRLAKYCRRFNVPFEYNA-IAKKWDSIQLNDLKINKGEMLVVNCLYRLIHVPDE 248
                 *********************************9*****************************.7********************************** PP

        GRAS 217 svsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekW 315
                 ++s +s+rd+vL+l+k+++P+v+ +   +  +ns+ F +rf eal +ys+lfd+ ea++pre++er   E++ +g+ei+ +va eg++r+er e +++W
  PHT46745.1 249 TASENSPRDDVLRLIKQIKPDVFLHGIINGTYNSSFFETRFKEALFHYSSLFDM-EATVPRENQERLLFEKVNFGKEIMTIVAWEGTARFERPEPYKQW 346
                 *****************************************************7.7888**************************************** PP

        GRAS 316 rerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                 + r ++aGF+++pl+ ++++++k+ ++  + + + ++e+ +++++gWk+r ++++S+W+
  PHT46745.1 347 QLRNQRAGFRQIPLERNTVNEVKAKVQLQYHKDFLMDEDGNWMLQGWKGRVIYALSCWE 405
                 ******************************888*************************5 PP
Sequence ? help Back to Top
Protein Sequence    Length: 409 aa     Download sequence    
MTRTLDDLFL SVLALMDRII WYLLLVKGDR NRGFYSNPRC CKNAGGSIEE RLAYKPLISH  60
EKLKLIRLHR LPYGEATERM AHYFADALEA RLAGTGIELY EAFAKRTITA ADILKAFQVY  120
VTALSNIFAG ESIGMLTREA TSIHIIDFGI LYGFQWPCFI QGISLGPSGP PKLRITGIDF  180
PQPGFRPAER VEETGRRLAK YCRRFNVPFE YNAIAKKWDS IQLNDLKINK GEMLVVNCLY  240
RLIHVPDETA SENSPRDDVL RLIKQIKPDV FLHGIINGTY NSSFFETRFK EALFHYSSLF  300
DMEATVPREN QERLLFEKVN FGKEIMTIVA WEGTARFERP EPYKQWQLRN QRAGFRQIPL  360
ERNTVNEVKA KVQLQYHKDF LMDEDGNWML QGWKGRVIYA LSCWEPVDN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.11e-142GRAS family protein