PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT46696.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

AP2

Protein Properties

Length: 456aa MW: 50210.9 Da PI: 8.3398

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT46696.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	53.3	6.8e-17	133	182	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g PHT46696.1 133 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHTAARAYDRAAIKFRG 182 78*****************......55**********************997 PP
2	AP2	39.4	1.5e-12	225	273	1	53
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkl 53 s+++GV+ +k grW+A+ + +k+++lg f+++ eAa+a+++a+ k PHT46696.1 225 SKFRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDSEVEAARAYDKAAIKT 273 79******.7**5553..2.26******99********886 PP

Sequence ? help Back to Top
Protein Sequence Length: 456 aa Download sequence
MMLDLNVNVI YNELPEGSVP DESGTSNSSL LNAEATTSTG DGESCSTRAG ELFAFNFGIL 60 KVGGAETSRN INNNDEDRRV VSHSEFVTRQ LFPVDNGELN RKETDRVILP GFGSELPKPQ 120 VKKSRRGPRS RSSQYRGVTF YRRTGRWESH IWDCGKQVYL GGFDTAHTAA RAYDRAAIKF 180 RGVDADINFN LSDYEEDMKQ MKNLGKEEFV HLLRRHSNGF SRGSSKFRGV TLHKCGRWEA 240 RMGQFLGKKY IYLGLFDSEV EAARAYDKAA IKTSGREAVT NFEPSAYEGE TMSEPQIEGS 300 QHDLDLNLGI STSSSKENGR LGGSCYHPYD IQDATKPKMH KPGPLIVGSS HLKGLPMTSQ 360 QAQSWTGIYS NFSSSYEGRT SDKRKDIGSS QGPPNWSLQM PSQVATTTPL TMFCTAASSG 420 FFVPATASIT SSTSALAPST NASQCFYQIS PRLPPP

Sequence ? help Back to Top

Protein Sequence Length: 456 aa Download sequence

MMLDLNVNVI YNELPEGSVP DESGTSNSSL LNAEATTSTG DGESCSTRAG ELFAFNFGIL  60
KVGGAETSRN INNNDEDRRV VSHSEFVTRQ LFPVDNGELN RKETDRVILP GFGSELPKPQ  120
VKKSRRGPRS RSSQYRGVTF YRRTGRWESH IWDCGKQVYL GGFDTAHTAA RAYDRAAIKF  180
RGVDADINFN LSDYEEDMKQ MKNLGKEEFV HLLRRHSNGF SRGSSKFRGV TLHKCGRWEA  240
RMGQFLGKKY IYLGLFDSEV EAARAYDKAA IKTSGREAVT NFEPSAYEGE TMSEPQIEGS  300
QHDLDLNLGI STSSSKENGR LGGSCYHPYD IQDATKPKMH KPGPLIVGSS HLKGLPMTSQ  360
QAQSWTGIYS NFSSSYEGRT SDKRKDIGSS QGPPNWSLQM PSQVATTTPL TMFCTAASSG  420
FFVPATASIT SSTSALAPST NASQCFYQIS PRLPPP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28550.3	1e-111	AP2 family protein