PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT46483.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

MYB

Protein Properties

Length: 505aa MW: 55399.7 Da PI: 5.2195

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT46483.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	54.4	3e-17	39	86	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT Ed +l d+v+++G g+W+++ ++ g+ R++k+c++rw ++l PHT46483.1 39 KGPWTSAEDAILMDYVTKHGEGNWNAVQKHSGLARCGKSCRLRWANHL 86 79******************************************9986 PP
2	Myb_DNA-binding	52.3	1.3e-16	92	135	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g++T+eE+ +++++++++G++ W++ a++++ gRt++++k++w++ PHT46483.1 92 KGAFTPEEERRIIELHAKMGNK-WARMAAELP-GRTDNEIKNYWNT 135 799*****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 505 aa Download sequence
MSMTSESDDR MASQDGVDSP SVEEACGGGI TGGGLPLKKG PWTSAEDAIL MDYVTKHGEG 60 NWNAVQKHSG LARCGKSCRL RWANHLRPDL KKGAFTPEEE RRIIELHAKM GNKWARMAAE 120 LPGRTDNEIK NYWNTRIKRR QRAGLPIYPP DISFQAISEN KQNEELGAFS STDSQYPDFL 180 PMNNFEIPAV EFKRLEFNQQ LCPPALLDIP NGGILDIPGR SLLAQGLNSA YYSRSFLSTM 240 PPAKRIRGAE SLFSGLNGDC SPSKNDGSFP TCHQYQDDGS LLAQSMGFSS SFNQNLTSVH 300 HPSSSGVIPG SHAPLNGKTS SSEPLWAEKL ELPSFQSQMA SWGLSSSPLP SLESVDTMIQ 360 SPPTEHTESC NLSPRNSGLL DAVLYESQTM RTSKSILHQE NSGDVVDNSC PDLHETGWET 420 YGDPISPLGH SAASVFSEYT PTSGSSPEEP QLVTMPGCKV KQEKFDFGPY DGKEDASDLI 480 FSRPDYLLES NCFGHMQKTA RPIWH

Sequence ? help Back to Top

Protein Sequence Length: 505 aa Download sequence

MSMTSESDDR MASQDGVDSP SVEEACGGGI TGGGLPLKKG PWTSAEDAIL MDYVTKHGEG  60
NWNAVQKHSG LARCGKSCRL RWANHLRPDL KKGAFTPEEE RRIIELHAKM GNKWARMAAE  120
LPGRTDNEIK NYWNTRIKRR QRAGLPIYPP DISFQAISEN KQNEELGAFS STDSQYPDFL  180
PMNNFEIPAV EFKRLEFNQQ LCPPALLDIP NGGILDIPGR SLLAQGLNSA YYSRSFLSTM  240
PPAKRIRGAE SLFSGLNGDC SPSKNDGSFP TCHQYQDDGS LLAQSMGFSS SFNQNLTSVH  300
HPSSSGVIPG SHAPLNGKTS SSEPLWAEKL ELPSFQSQMA SWGLSSSPLP SLESVDTMIQ  360
SPPTEHTESC NLSPRNSGLL DAVLYESQTM RTSKSILHQE NSGDVVDNSC PDLHETGWET  420
YGDPISPLGH SAASVFSEYT PTSGSSPEEP QLVTMPGCKV KQEKFDFGPY DGKEDASDLI  480
FSRPDYLLES NCFGHMQKTA RPIWH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06100.1	3e-83	MYB family protein