PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT46474.1
Organism
Capsicum baccatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family MYB_related
Protein Properties Length: 400aa    MW: 43825.6 Da    PI: 5.3728
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT46474.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding37.46.1e-1298142347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT eE+  ++++ + +G g+W++Iar+   +Rt  q+ s+ qky
       PHT46474.1  98 AWTVEEHRSFLRGLAIYGRGDWRSIARHCVITRTSTQVASHAQKY 142
                      7***************************9989************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 400 aa     Download sequence    
MSTDRTCNSS FWTKEEDKIF ETTLAIYFKG GDLLTKMEEA LPWKSRDNIL NHYKILIEDV  60
DAIEFGRVPL PNYPELPSHS NQKNRSSKTD LAWRKGVAWT VEEHRSFLRG LAIYGRGDWR  120
SIARHCVITR TSTQVASHAQ KYFNHLKAVN KENRRMSIHD VTIVGADIAG TSQVPYTEGM  180
ILPACGGSQA VASSSNQSLL PQESTNAEQM LAVAGGESSG HSAAFVSGMN SMDPDEDDEF  240
IKHIDDLIVD PEDANESEFL VDGGRSLLPS KQPCTAGSSG TNNHPIFRVG SDLEALITKQ  300
KNEDYDFTFI LDDGEAPISH AMLSNASHSG MASFAVASNN AYNPPQNTVS AHSRMTSFAA  360
ASIGPNNAPQ NMVADHPQSP HVAPSSNCVV GEWPQFKYYN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.19e-46MYB family protein