PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT46446.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

E2F/DP

Protein Properties

Length: 438aa MW: 48139.4 Da PI: 4.3342

Description

E2F/DP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT46446.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	E2F_TDP	86.2	2.4e-27	118	183	1	71
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 r+++sL+llt+kf++l++++e+g+++ln++a++L +v ++RRiYDi+NVLe+++liekk kn+i+wkg PHT46446.1 118 RYDSSLGLLTKKFINLIKHAEDGVLDLNKAADTL---EV--QKRRIYDITNVLEGIGLIEKKLKNRIQWKG 183 6899****************************...99..**************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 438 aa Download sequence
MQGNQQSKLP FTSSKPPLGD YHRFSTDPLQ QPEGIALKSS TPLKRKSEIA NYEQGVGTQV 60 AGSGYADVSS PMQTPISGKA GKSQKVPRTS KARSAAQAAA SNLGSPSGNN VTPVGPCRYD 120 SSLGLLTKKF INLIKHAEDG VLDLNKAADT LEVQKRRIYD ITNVLEGIGL IEKKLKNRIQ 180 WKGLDVSKPG EADESVTSLQ AGVENLTIEE NRLDEQIREM QERLRDLSED ENNQRWLFVT 240 EDDIKSLPCL QNETLIAIKA PHGTTLEVPD PDEAVDYPQR RYRIVLRSTM GPIDVYLVSQ 300 FEEKFEEINA VEAPSTMPST SGFIENETGT LPAEDGRGVD DGIEEQENQR EFPDAGTSQD 360 PVSGFMKIVP DVDNEADYWL LSDADVSITD MWRTESALDW NELNAIHEDY SIADVSTPRA 420 QTPPSITTEV PSTSTPGS

Sequence ? help Back to Top

Protein Sequence Length: 438 aa Download sequence

MQGNQQSKLP FTSSKPPLGD YHRFSTDPLQ QPEGIALKSS TPLKRKSEIA NYEQGVGTQV  60
AGSGYADVSS PMQTPISGKA GKSQKVPRTS KARSAAQAAA SNLGSPSGNN VTPVGPCRYD  120
SSLGLLTKKF INLIKHAEDG VLDLNKAADT LEVQKRRIYD ITNVLEGIGL IEKKLKNRIQ  180
WKGLDVSKPG EADESVTSLQ AGVENLTIEE NRLDEQIREM QERLRDLSED ENNQRWLFVT  240
EDDIKSLPCL QNETLIAIKA PHGTTLEVPD PDEAVDYPQR RYRIVLRSTM GPIDVYLVSQ  300
FEEKFEEINA VEAPSTMPST SGFIENETGT LPAEDGRGVD DGIEEQENQR EFPDAGTSQD  360
PVSGFMKIVP DVDNEADYWL LSDADVSITD MWRTESALDW NELNAIHEDY SIADVSTPRA  420
QTPPSITTEV PSTSTPGS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22220.2	1e-148	E2F/DP family protein