PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT46383.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

C3H

Protein Properties

Length: 356aa MW: 38710.9 Da PI: 7.0146

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT46383.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	29.6	1.2e-09	105	129	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt+lC+ f++ G C+y +C+FaHg PHT46383.1 105 FKTKLCCKFRA-GVCPYVTNCNFAHG 129 69*******.***********8 PP
2	zf-CCCH	19.1	2.3e-06	183	204	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C+ f+ C+yGd+C+F H+ PHT46383.1 183 HCKKFYTEEGCPYGDSCTFLHD 204 599999999************7 PP
3	zf-CCCH	41.5	2.1e-13	238	263	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt++C+ + tG+C++G++C+FaHg PHT46383.1 238 WKTRICNKWETTGYCPFGGKCHFAHG 263 8************************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 356 aa Download sequence
MDYTGDGGFA GGNVIPDSAA GSGGGFESWG PNFSDQAVWA TEDDYKAWNT GPFCETPSNS 60 SQDGGRHSQN RSGSDPPNKK SRNVQDSDAR VIVTSSSKAI GKMFFKTKLC CKFRAGVCPY 120 VTNCNFAHGI EELRKPPPNW QEIVAAHESE RGGMVEMREE HQIPILSSPD LRGESQRSSK 180 GRHCKKFYTE EGCPYGDSCT FLHDEQSRSR ESVAISVTPT VGGFGNNAAG ATQKPSNWKT 240 RICNKWETTG YCPFGGKCHF AHGAAELNKF GGPSEAEGKD YVSVPPDSKQ GGVPLRATES 300 TLPSIIPALH SDVYHLGQGV QVQRPTGIVE RPGQRLKWKG PDKISKIYGD WIDDLE

Sequence ? help Back to Top

Protein Sequence Length: 356 aa Download sequence

MDYTGDGGFA GGNVIPDSAA GSGGGFESWG PNFSDQAVWA TEDDYKAWNT GPFCETPSNS  60
SQDGGRHSQN RSGSDPPNKK SRNVQDSDAR VIVTSSSKAI GKMFFKTKLC CKFRAGVCPY  120
VTNCNFAHGI EELRKPPPNW QEIVAAHESE RGGMVEMREE HQIPILSSPD LRGESQRSSK  180
GRHCKKFYTE EGCPYGDSCT FLHDEQSRSR ESVAISVTPT VGGFGNNAAG ATQKPSNWKT  240
RICNKWETTG YCPFGGKCHF AHGAAELNKF GGPSEAEGKD YVSVPPDSKQ GGVPLRATES  300
TLPSIIPALH SDVYHLGQGV QVQRPTGIVE RPGQRLKWKG PDKISKIYGD WIDDLE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32360.1	1e-114	C3H family protein