PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT45888.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

C2H2

Protein Properties

Length: 526aa MW: 58724.4 Da PI: 8.0042

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT45888.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.5	0.0001	77	99	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++C+k F r nL+ H r H PHT45888.1 77 FFCEICNKGFQRDQNLQLHRRGH 99 67*******************88 PP

Sequence ? help Back to Top
Protein Sequence Length: 526 aa Download sequence
MSILTSEEAA ASLSSCNMNN DTSTGAFCYP SQQHLATPQY QNSPQQIKKK RNQPGNPDPE 60 SEVIALSPKT LVATNRFFCE ICNKGFQRDQ NLQLHRRGHN LPWKLKKREN KEVVRKKVYI 120 CPELSCVHHD PSRALGDLTG IKKHYSRKHG EKKWKCEKCS KRYAVQSDCK AHFKTCGTRE 180 YKCECGTIFS RRDSFITHRA FCDTLAVENA RISASITGNP TILPSQMNLQ FQKPHYFNSH 240 DQIPATFSMK KEQPTSDFRH IDIPPWLMMT TNCQPFAGDG TGSGSTPQNN FSSSSIFFPA 300 ATRLDQQYTH KDLNNLHDNP NPNLPAEPRS GYHSTGESAA ASPHNISATA LLQKADQFGA 360 TISNKASAVV SAATYNTGPT LLMRQIPHNT HVSVTNTTAS ATKQIHQNNL SSREEQMMTT 420 STTITTTTGP ANISGIMTSF SNFANGFEGS TTFEEDAILF STGFTNLNSK KEDDDHQLYE 480 EDMTKDFLGL RPLSHTDHDI FNIAGLVNST TEHDDDQFKI HKTWQS

Sequence ? help Back to Top

Protein Sequence Length: 526 aa Download sequence

MSILTSEEAA ASLSSCNMNN DTSTGAFCYP SQQHLATPQY QNSPQQIKKK RNQPGNPDPE  60
SEVIALSPKT LVATNRFFCE ICNKGFQRDQ NLQLHRRGHN LPWKLKKREN KEVVRKKVYI  120
CPELSCVHHD PSRALGDLTG IKKHYSRKHG EKKWKCEKCS KRYAVQSDCK AHFKTCGTRE  180
YKCECGTIFS RRDSFITHRA FCDTLAVENA RISASITGNP TILPSQMNLQ FQKPHYFNSH  240
DQIPATFSMK KEQPTSDFRH IDIPPWLMMT TNCQPFAGDG TGSGSTPQNN FSSSSIFFPA  300
ATRLDQQYTH KDLNNLHDNP NPNLPAEPRS GYHSTGESAA ASPHNISATA LLQKADQFGA  360
TISNKASAVV SAATYNTGPT LLMRQIPHNT HVSVTNTTAS ATKQIHQNNL SSREEQMMTT  420
STTITTTTGP ANISGIMTSF SNFANGFEGS TTFEEDAILF STGFTNLNSK KEDDDHQLYE  480
EDMTKDFLGL RPLSHTDHDI FNIAGLVNST TEHDDDQFKI HKTWQS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	104	117	KLKKRENKEVVRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50700.1	5e-96	C2H2 family protein