PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT45476.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

C2H2

Protein Properties

Length: 312aa MW: 34761.9 Da PI: 7.9469

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT45476.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.2	0.00012	196	218	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++C+k+ +++ L +H H PHT45476.1 196 YQCEICNKVMKSSQALGSHKTIH 218 9******************9887 PP
2	zf-C2H2	11.1	0.0012	243	265	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp Cgk F + L H r+H PHT45476.1 243 HECPFCGKIFGSGQALGGHKRSH 265 79**************9999998 PP

Sequence ? help Back to Top
Protein Sequence Length: 312 aa Download sequence
MSMEKHKCKL CSRKFSSGKA MGGHMRSHLR ALPLPPKTPP QKQDSAPGGG GCSESTISLY 60 EDEEEEEEIR DDKCSSYVLR ENPKKSSRIV DPEFMDAGSV VHEKDQSETE STMKPTKRRS 120 KRTRLRRLFT SDHEAVDHHA KKEKKNPPEF ESVSSFSDTS PEEDIAVCLM MLSKDVWKKS 180 NSDESQLKDK KQGKYYQCEI CNKVMKSSQA LGSHKTIHKK NKSSSCNEEN SSQVRAKNVD 240 HDHECPFCGK IFGSGQALGG HKRSHILSSS ITGSSSSKVG DSLMDSSSGK FPYGFIDLNM 300 PAPVEDEDFS IS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G02030.1	4e-29	C2H2 family protein