PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT45379.1
Organism
Capsicum baccatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family C3H
Protein Properties Length: 278aa    MW: 31507.4 Da    PI: 10.0874
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT45379.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.32.2e-071171026
                GGTS--TTTTT-SS-SS CS
     zf-CCCH 10 artGtCkyGdrCkFaHg 26
                ++tG+Cky  +CkF+H+
  PHT45379.1  1 MKTGQCKYRITCKFHHP 17
                89**************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    
MKTGQCKYRI TCKFHHPLRA GVQGPSVAAS FPFLTGEPFP LPAVVPLTTT YPALQSPFVH  60
STKQYGMVVG NWTIVRPTLL SESMRWLLVV FHWSRIDGLS VNLDGSSSQK KGGEEDERVR  120
GDISSPAGGV DVEWVTEMRI LRWMCGLTRG DRVRNEIIQK KVGVASVEDK MWEGRLRWFG  180
HVMKRGADAP IYRYERLALD GFRRGRGKPK KYWRDVIRHD MEQLQLTEDM TLDRKEIAVL  240
DKRLMGQQLL AKEKVPQLEK GKDPATDVGT CTPAGNGW
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18550.17e-11C3H family protein