PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PHT44655.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 176aa MW: 20813.9 Da PI: 9.1142 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 26.7 | 7.2e-09 | 10 | 57 | 2 | 48 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T.TSEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss.tgklye 48 ri + ++++v + kR + + KKA+ L +LCd+e+ + f + +++++ PHT44655.1 10 RIVDPRKKKVLLDKRFASLCKKAKDLTILCDIEIGMFFFTPgDQNIFA 57 778889999*************************99888763445555 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 176 aa Download sequence |
MTKMGVRPSR IVDPRKKKVL LDKRFASLCK KAKDLTILCD IEIGMFFFTP GDQNIFAWPS 60 LTQATDRMKN YLASSDKQRQ IKMVRHEDFL QSILNAKEGK INQLEQMVDK KEMEYNFNQL 120 VEARRRFDEL EVREIRALIN LFAVKRTQLD ERAKQLNENE IDSNDYNNRE ENDGHL |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06500.1 | 1e-13 | M-type_MADS family protein |