PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT44464.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

C3H

Protein Properties

Length: 361aa MW: 39465.4 Da PI: 7.3919

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT44464.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	39.9	7e-13	44	69	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +t++C+f++rtG C yG++C+++H+p PHT44464.1 44 GTPNCSFYMRTGSCGYGAQCRYNHPP 69 79**********************97 PP
2	zf-CCCH	37.4	4.2e-12	90	114	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C++++rt tCkyG++CkF+H++ PHT44464.1 90 EPICQYYLRTATCKYGASCKFHHPR 114 799********************96 PP
3	zf-CCCH	37.4	4.1e-12	135	159	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++ C+++++tG+Ck+G +CkF+H+ PHT44464.1 135 EERVCSYYLKTGQCKFGLTCKFHHP 159 5789********************8 PP
4	zf-CCCH	40.7	4e-13	264	289	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C+++++tG Ck+G++CkF+H+ PHT44464.1 264 PGQRVCQYYMQTGDCKFGSSCKFHHP 289 57899********************8 PP
5	zf-CCCH	37.1	5.4e-12	311	336	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 + +C+f+++ G+Ck+G++CkF H++ PHT44464.1 311 GVQPCSFYMQRGFCKFGGTCKFDHPM 336 6789********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 361 aa Download sequence
MEMYGGSQSD QQPEWVPVGP ETGLEESMRR LGLWSNEGYP ERSGTPNCSF YMRTGSCGYG 60 AQCRYNHPPD LTSVGVVPLE RSEYPERIGE PICQYYLRTA TCKYGASCKF HHPRNLGGSL 120 SNVPLNEYGY PLRPEERVCS YYLKTGQCKF GLTCKFHHPN PAEVSAPVTA QPFYPTVPSL 180 PAPLEETRPQ LLPSSYVPGT YGPVLLHPGL ATVQNWSTYS APGSLALSQL ASSTPAIAAP 240 YSSLHSAAGP SSSALQEKHF PERPGQRVCQ YYMQTGDCKF GSSCKFHHPA DWSPSKTDCA 300 VNSLGLPLRP GVQPCSFYMQ RGFCKFGGTC KFDHPMGTVR DSSSASSLPD IPNAPYMSSP 360 E

Sequence ? help Back to Top

Protein Sequence Length: 361 aa Download sequence

MEMYGGSQSD QQPEWVPVGP ETGLEESMRR LGLWSNEGYP ERSGTPNCSF YMRTGSCGYG  60
AQCRYNHPPD LTSVGVVPLE RSEYPERIGE PICQYYLRTA TCKYGASCKF HHPRNLGGSL  120
SNVPLNEYGY PLRPEERVCS YYLKTGQCKF GLTCKFHHPN PAEVSAPVTA QPFYPTVPSL  180
PAPLEETRPQ LLPSSYVPGT YGPVLLHPGL ATVQNWSTYS APGSLALSQL ASSTPAIAAP  240
YSSLHSAAGP SSSALQEKHF PERPGQRVCQ YYMQTGDCKF GSSCKFHHPA DWSPSKTDCA  300
VNSLGLPLRP GVQPCSFYMQ RGFCKFGGTC KFDHPMGTVR DSSSASSLPD IPNAPYMSSP  360
E

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47850.1	1e-142	C3H family protein