PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT44267.1
Organism
Capsicum baccatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family GRAS
Protein Properties Length: 582aa    MW: 64531.9 Da    PI: 6.6009
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT44267.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS427.11.4e-1302125811373
        GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                 l++lL+ecA+a+++++l+  ++l+a+ ++ +s +gdp++Rl ay++e+L ar  +s++++y+al+++e +     + l+++++++e++P+lkf++++aN
  PHT44267.1 212 LKQLLIECARALAENNLNDFEQLIAQARNAVSITGDPIERLGAYIVEGLVARKDGSGTNIYRALRCKEPA---GRDLLSYMHILYEICPYLKFGYMAAN 307
                 689******************************************************************9...9************************* PP

        GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196
                  aI ea  +e+r+HiiDf+i qG+QW++LlqaLa+Rp+g+p +RiTg+++p s+  + + l ++g+rLa + +++++p+ef++ v    ++++ ++L+v
  PHT44267.1 308 GAIAEACRNEDRIHIIDFQIAQGTQWMTLLQALAARPSGAPYVRITGIDDPVSKyaRGDGLTAVGKRLAAISAKFNIPIEFHA-VPVFASEVTRDMLDV 405
                 ***************************************************999999**************************.688999********* PP

        GRAS 197 kpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreiv 295
                 +pgEalaVn+ l+lh+++desv+++++rde+L++vks sPkvv++veqe+++n+++F+ rfleal+yysa+f+s++++l r+ +eri+vE+++l+r+iv
  PHT44267.1 406 RPGEALAVNFPLALHHTPDESVDVTNPRDELLRMVKSFSPKVVTLVEQESNTNTAPFFPRFLEALDYYSAMFESIDVTLERDRKERINVEQHCLARDIV 504
                 *************************************************************************************************** PP

        GRAS 296 nvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                 nv+aceg+er+erhe l+kW+ rl++aGF+++pls+++++ +k+llr ++ + y++ e++g+++lgWk+r+L+s+SaW
  PHT44267.1 505 NVIACEGKERVERHELLGKWKLRLTMAGFHQYPLSSYVNSVIKSLLRCYS-EHYTLVEKDGAMLLGWKERNLISASAW 581
                 **********************************************9999.66************************* PP
Sequence ? help Back to Top
Protein Sequence    Length: 582 aa     Download sequence    
MESHHLYGYG VTGANLSYAY SKTTTPSIPN RLLGTLKFDS GYSPNSPFVN YFDPGTPTTL  60
SDSLEQHSST ENISGTSCSS NSSLDYSHYF RRPSPSPDFR QNSLLVCSGE TSLLQYANHS  120
HNVKHALLQL ETALMGPEEA TTSSPSAGEI QQPQTSGQSS GMWSQDGQVS RRIGSQPSTV  180
PVFGISGNRI QSEKRHKAME DFPVQGIPSG NLKQLLIECA RALAENNLND FEQLIAQARN  240
AVSITGDPIE RLGAYIVEGL VARKDGSGTN IYRALRCKEP AGRDLLSYMH ILYEICPYLK  300
FGYMAANGAI AEACRNEDRI HIIDFQIAQG TQWMTLLQAL AARPSGAPYV RITGIDDPVS  360
KYARGDGLTA VGKRLAAISA KFNIPIEFHA VPVFASEVTR DMLDVRPGEA LAVNFPLALH  420
HTPDESVDVT NPRDELLRMV KSFSPKVVTL VEQESNTNTA PFFPRFLEAL DYYSAMFESI  480
DVTLERDRKE RINVEQHCLA RDIVNVIACE GKERVERHEL LGKWKLRLTM AGFHQYPLSS  540
YVNSVIKSLL RCYSEHYTLV EKDGAMLLGW KERNLISASA WH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.11e-179GRAS family protein