PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT43866.1
Organism
Capsicum baccatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family M-type_MADS
Protein Properties Length: 264aa    MW: 30484.5 Da    PI: 5.4853
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT43866.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF45.41e-141149341
                --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE- CS
      SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifs 41
                i+++ nr+ t+ kR++ + KK +EL +LC+++v++ii++
  PHT43866.1 11 IQDHKNRKSTLVKRKASLVKKISELAILCGIKVCMIIYG 49
                899***********************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    
MGRAKINMEL IQDHKNRKST LVKRKASLVK KISELAILCG IKVCMIIYGG ITDQDTSQRD  60
QIWPNDPKEV DELINLYKNQ PLTCRSKRAK TFSNFFENQR KKPEIKAEKY PTWDSRFDYL  120
SEKELQNLAR VLEKRIEDAK GKAEFLKSTN TRSSSLLSHQ EIRDYTELMN NNYNSLMNQA  180
TSLWPSIDYN FFQANIQSGV NSMGTGMDIQ PLTIDDYQFE DADYSMMIEA ENWLANNGIG  240
SSSTIMAYPI IYNASTDDMP FEFQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G55690.15e-22M-type_MADS family protein