PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT43835.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

TCP

Protein Properties

Length: 396aa MW: 43342.5 Da PI: 6.5135

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT43835.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	120.4	2.2e-37	29	140	2	89
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.............ssssaseceaesssssasnsss 87 +g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++akpai+el+++ + + ++++++++++++ PHT43835.1 29 TGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKPAIDELAELppwkpnigsddagT------T--NERNQKQQEDTN 119 79**************************************************************87775553222211......1..111111111111 PP TCP 88 g...................k 89 + + PHT43835.1 120 NnfafqqenaslfddnvagpS 140 122233333444433222210 PP

Sequence ? help Back to Top
Protein Sequence Length: 396 aa Download sequence
MGETSRLGAR DNNVGEIVEV QGGHIVRSTG RKDRHSKVCT AKGPRDRRVR LSAHTAIQFY 60 DVQDRLGYDR PSKAVDWLIK KAKPAIDELA ELPPWKPNIG SDDAGTTNER NQKQQEDTNN 120 NFAFQQENAS LFDDNVAGPS SKRAMESSNT ASFLPPSLES DAIADTIKSF FPMGSATSSN 180 SSAMQFQSFQ EPHLLPRTNS QNQDLSLSLQ FQDPILLHHQ NQTNRREQVQ VQPPAHFTGS 240 TPLGFDTSGW SMHHQQTVEL GRVQRVGSWS DSRDTAPGGG GGGGYLFNSP PAPVLLQQLF 300 GQNQFFTQRG PLQSSNTSSI RAWMDPSAIA IASADPSQHH HQAAFPMYQS TIPGYGFASD 360 VGGFSGFRIP ARIQGEEEEH DGISDKPSSA SSDSRH

Sequence ? help Back to Top

Protein Sequence Length: 396 aa Download sequence

MGETSRLGAR DNNVGEIVEV QGGHIVRSTG RKDRHSKVCT AKGPRDRRVR LSAHTAIQFY  60
DVQDRLGYDR PSKAVDWLIK KAKPAIDELA ELPPWKPNIG SDDAGTTNER NQKQQEDTNN  120
NFAFQQENAS LFDDNVAGPS SKRAMESSNT ASFLPPSLES DAIADTIKSF FPMGSATSSN  180
SSAMQFQSFQ EPHLLPRTNS QNQDLSLSLQ FQDPILLHHQ NQTNRREQVQ VQPPAHFTGS  240
TPLGFDTSGW SMHHQQTVEL GRVQRVGSWS DSRDTAPGGG GGGGYLFNSP PAPVLLQQLF  300
GQNQFFTQRG PLQSSNTSSI RAWMDPSAIA IASADPSQHH HQAAFPMYQS TIPGYGFASD  360
VGGFSGFRIP ARIQGEEEEH DGISDKPSSA SSDSRH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G15030.2	1e-96	TCP family protein