PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT43582.1
Organism
Capsicum baccatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family GRAS
Protein Properties Length: 517aa    MW: 58977.7 Da    PI: 4.6916
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT43582.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS144.88.7e-451505162373
        GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100
                  +lL +  ea+++g++ela+ ++  ++   +p g++++R+a+     L   + +++         s  ++++ +   aa+k+f++v+P+ kf+h++aN+
  PHT43582.1 150 HHLLAAYGEAMENGHKELAEVIIRSIKGKINPLGESLERVASN----LFLEIGDQG---------SYLRKESCKIIEAAFKVFYQVFPLGKFAHFAANS 235
                 799999**********************************975....667777722.........222222345555799******************* PP

        GRAS 101 aIleavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...skeeleetgerLakfAeelgvpfefnvlvakrl.edleleeL 194
                 aI eav  + ++v i+Dfd+++G+QWp++++a+ +R++    lR T +++ e++    + + eet++rL ++A+ +g+ ++ + ++ ++l ++l+  + 
  PHT43582.1 236 AIIEAVPDDaQTVLIVDFDMGEGIQWPPIIEAMGQRRKA---LRFTSIKKTEEEstsFQWRFEETKRRLLDYANLFGLILQVEEMTIEELaSELRRMK- 330
                 ******88879*************************776...******99887777667899*********************984443303333333. PP

        GRAS 195 rvkp....gEalaVnlvlqlhrlldesvsles.....erdevLklvkslsPkvvvvveqeadhnse....sFlerflealeyysalfdsleaklpres. 279
                    +     E l+ n++++l ++  +   ++        +e+L +  s+   +v++ + ea  ns+    ++ + f + l yy ++f+sle  +p+   
  PHT43582.1 331 ---KrgkgSEWLVFNCMFKLPHMGTRMCRTDAleflkLATELLLAKSSTHKGLVTFGDGEATDNSHnanyTYSAFFNKNLMYYQSIFESLELCFPAYLa 426
                 ...34456***************95544444433333566677777778889********988888777799999*******************99877 PP

        GRAS 280 eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve...eesgslvlgWkdrpLvsvSaW 373
                 ++r  +E  +l++++++    +  e      ++++ +   +e  ++  ++s+++  qak l+++ +   +rv    e+++++vl Wk+ +Lv vS W
  PHT43582.1 427 QARLAMESLFLAPQVCSFSWIKIWE------EKRSVSYSCTEIELQGKRVSKENLLQAKELVNERGTP-FRVRieeERQHEMVLEWKGTSLVRVSIW 516
                 ***************9987766666......45555778999***********************955.66655467799***************** PP
Sequence ? help Back to Top
Protein Sequence    Length: 517 aa     Download sequence    
MQSELLNNSW CSTFHQTEFC GIQSDYENGK HGITYSSLNS KDQDSSGISF SDFTSQSFSD  60
FTSLFSDDDV LTDLPMDDSE FDDVCLWLND NESEENGNMN NISSEMKRYG DLWSPALSEV  120
SSELLSSTNR ATSLILPGNI GEMDSRMSLH HLLAAYGEAM ENGHKELAEV IIRSIKGKIN  180
PLGESLERVA SNLFLEIGDQ GSYLRKESCK IIEAAFKVFY QVFPLGKFAH FAANSAIIEA  240
VPDDAQTVLI VDFDMGEGIQ WPPIIEAMGQ RRKALRFTSI KKTEEESTSF QWRFEETKRR  300
LLDYANLFGL ILQVEEMTIE ELASELRRMK KRGKGSEWLV FNCMFKLPHM GTRMCRTDAL  360
EFLKLATELL LAKSSTHKGL VTFGDGEATD NSHNANYTYS AFFNKNLMYY QSIFESLELC  420
FPAYLAQARL AMESLFLAPQ VCSFSWIKIW EEKRSVSYSC TEIELQGKRV SKENLLQAKE  480
LVNERGTPFR VRIEEERQHE MVLEWKGTSL VRVSIWM
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.15e-20GRAS family protein