PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT43275.1
Organism
Capsicum baccatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family MYB_related
Protein Properties Length: 269aa    MW: 30434.3 Da    PI: 4.4039
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT43275.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding60.63.4e-192266147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     rg+ T+eEde+++++++qlG++ W++Ia++++ gR+++++k++w++ 
       PHT43275.1 22 RGNYTKEEDEIILNLHAQLGNK-WSAIAAHLP-GRSDNEIKNHWHTT 66
                     899*******************.*********.***********986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    
LARCGKSCRL RWMNYLSPNV KRGNYTKEED EIILNLHAQL GNKWSAIAAH LPGRSDNEIK  60
NHWHTTLKKH ATHNATNSSS DKSSKKCSNN KNKNTKSNAS KDASLNNNMH ENVILESSEW  120
SPKESLSDQE LISSYSTSVD YQNDVFQEEN LVEITSGSFW TEPFVVESFN SPRIDFLGPP  180
SIDYGLVCPP SPFIGEGFVS SFDLDDYNCG RIVEEEAEDG KKEATDKEEG EDKKDEEKEE  240
KEEADKKDVV LDIVDFIIDN ICDDDEKDI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23250.12e-33MYB family protein