PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PHT43260.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 125aa MW: 14479 Da PI: 10.672 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 68.1 | 8.5e-22 | 17 | 62 | 4 | 49 |
-SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 +n+s qvtfskRr+gi+KKA+EL++LC+ae+a+++f ++ k+y + PHT43260.1 17 KNESSLQVTFSKRRAGIFKKASELCTLCGAEIAIVVFFPEKKVYSF 62 799999**************************************98 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 125 aa Download sequence |
MARRRKGRQR VYIVKMKNES SLQVTFSKRR AGIFKKASEL CTLCGAEIAI VVFFPEKKVY 60 SFGHPSVELL VDRFLGRNLP PPNNDGRQNH LLMNHRNVVL RELNKEVMNM EEILQMEKAH 120 GESIL |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 7e-41 | M-type_MADS family protein |