PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT42986.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

ARF

Protein Properties

Length: 1123aa MW: 126221 Da PI: 6.5091

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT42986.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	71.1	1.4e-22	126	227	1	99
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 f+k+lt sd++++g +++p++ ae++ + +++ ++l+ +d++ + W++++iyr++++r++lt+GW+ F ++++L++gD+v+F + +++ +l PHT42986.1 126 FCKTLTASDTSTHGGFSVPRRAAEKIfppldysM-QPPA-QELMARDLHDQAWTFRHIYRGQPKRHLLTTGWSVFISSKRLCAGDSVLFIR--DEKSQL 220 99***************************954.5444.38**********************************************4..466667 PP EEEEE-S CS B3 93 vvkvfrk 99 ++++ r+ PHT42986.1 221 LLGIKRA 227 8888765 PP
2	Auxin_resp	122.4	3.3e-40	252	334	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+++s+F+++YnPras+seFv++++k++k+++++vs+GmRf+m+fete++ rr++Gt++gvsdld++rW+nS+Wr+L+ PHT42986.1 252 AAHAAANNSPFTIFYNPRASPSEFVIPLAKYNKSMYSQVSLGMRFRMMFETEEAGVRRYMGTITGVSDLDTIRWKNSQWRNLQ 334 79*******************************************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 1123 aa Download sequence
MKAPSNGYIP NSGEGERKLM NSELWHACAG PLVSLPPVGS LVVYFPQGHS EQVAASMQKE 60 TDGIPSYPNL PSKLICMLHN VTLHADTETD EVYAQMTLQP VNKYDQEALL LSDMGLKQNR 120 QPAEFFCKTL TASDTSTHGG FSVPRRAAEK IFPPLDYSMQ PPAQELMARD LHDQAWTFRH 180 IYRGQPKRHL LTTGWSVFIS SKRLCAGDSV LFIRDEKSQL LLGIKRANRQ QPALSSSVIS 240 SDSMHIGILA AAAHAAANNS PFTIFYNPRA SPSEFVIPLA KYNKSMYSQV SLGMRFRMMF 300 ETEEAGVRRY MGTITGVSDL DTIRWKNSQW RNLQVGWDES TAGERPSRVS IWDIEPVVTP 360 FYICPPPFFR PKFHKQPSFP GDESDIENVL KRGMPWISDE FGLKDAQSSI FPGLSLVQWM 420 SMQQNNHVPV AQSGLPSVLH SNIGTDDHSK LLNFQSPTLA SPDLQFNKPN QLNQQFGQIQ 480 QPPLAWAQQQ QPPLQSPIIA QQRQHTLQQQ QQHQQQQQHL QQQQQQQQQH SQQQQQQQQQ 540 QPQQPQQPQQ HMLHQQPQPQ PQPQPQPQPQ LHQQAQQQLQ QKQRPSQQQQ LTVNSSPVNH 600 CVSPNQIPNQ TFPQAVIYGQ LQQQQVLSSS IQSQQNVPVN RNPFPSPSLA QDLQFQQQVE 660 QQSNLLQKSQ QQHTIPQEAP LQLLQQSLMQ RPQVQPSSQQ SLTEQQLQLQ LLNKLQQQQK 720 QQAQLLSPVS CTLEPRMSQQ QQNQQPQELQ FAHQQLSSSI MMAATHLQSP QHAFNQLQNH 780 NKLPITIKGI SGATDGDAPS CSTSPSTNNF QVSPPNFLTR NQEQSLQVDE SVVDPSQEQN 840 KSEFRIKHEP PFSKGSEQSK YKASGTENLE AASSTTSYGL DYSGFNFSLP ALCVDGDVQS 900 HSRSSLPSAV NNIDGLNPDA LLSRDYDSGK DMQNLFSPFG NAPKDIETEL SDAGINSQQF 960 GVPNMSYKPR CASDLAVIDN GVLNNNSWMN QTQRMRTYTK VQKRGSVGRT IDVTRYVGYD 1020 ELRHDLARMF GIEGQLEDPQ RTEWKLVYVD HENDILLVGD DPWEEFVSCV QSIKILSCAE 1080 VQQMSLDGDL GNVPVPNQAS SGTDSGNAWR GHYDDSSAAS FNR

Sequence ? help Back to Top

Protein Sequence Length: 1123 aa Download sequence

MKAPSNGYIP NSGEGERKLM NSELWHACAG PLVSLPPVGS LVVYFPQGHS EQVAASMQKE  60
TDGIPSYPNL PSKLICMLHN VTLHADTETD EVYAQMTLQP VNKYDQEALL LSDMGLKQNR  120
QPAEFFCKTL TASDTSTHGG FSVPRRAAEK IFPPLDYSMQ PPAQELMARD LHDQAWTFRH  180
IYRGQPKRHL LTTGWSVFIS SKRLCAGDSV LFIRDEKSQL LLGIKRANRQ QPALSSSVIS  240
SDSMHIGILA AAAHAAANNS PFTIFYNPRA SPSEFVIPLA KYNKSMYSQV SLGMRFRMMF  300
ETEEAGVRRY MGTITGVSDL DTIRWKNSQW RNLQVGWDES TAGERPSRVS IWDIEPVVTP  360
FYICPPPFFR PKFHKQPSFP GDESDIENVL KRGMPWISDE FGLKDAQSSI FPGLSLVQWM  420
SMQQNNHVPV AQSGLPSVLH SNIGTDDHSK LLNFQSPTLA SPDLQFNKPN QLNQQFGQIQ  480
QPPLAWAQQQ QPPLQSPIIA QQRQHTLQQQ QQHQQQQQHL QQQQQQQQQH SQQQQQQQQQ  540
QPQQPQQPQQ HMLHQQPQPQ PQPQPQPQPQ LHQQAQQQLQ QKQRPSQQQQ LTVNSSPVNH  600
CVSPNQIPNQ TFPQAVIYGQ LQQQQVLSSS IQSQQNVPVN RNPFPSPSLA QDLQFQQQVE  660
QQSNLLQKSQ QQHTIPQEAP LQLLQQSLMQ RPQVQPSSQQ SLTEQQLQLQ LLNKLQQQQK  720
QQAQLLSPVS CTLEPRMSQQ QQNQQPQELQ FAHQQLSSSI MMAATHLQSP QHAFNQLQNH  780
NKLPITIKGI SGATDGDAPS CSTSPSTNNF QVSPPNFLTR NQEQSLQVDE SVVDPSQEQN  840
KSEFRIKHEP PFSKGSEQSK YKASGTENLE AASSTTSYGL DYSGFNFSLP ALCVDGDVQS  900
HSRSSLPSAV NNIDGLNPDA LLSRDYDSGK DMQNLFSPFG NAPKDIETEL SDAGINSQQF  960
GVPNMSYKPR CASDLAVIDN GVLNNNSWMN QTQRMRTYTK VQKRGSVGRT IDVTRYVGYD  1020
ELRHDLARMF GIEGQLEDPQ RTEWKLVYVD HENDILLVGD DPWEEFVSCV QSIKILSCAE  1080
VQQMSLDGDL GNVPVPNQAS SGTDSGNAWR GHYDDSSAAS FNR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G19220.1	0.0	ARF family protein