PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT42863.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

FAR1

Protein Properties

Length: 694aa MW: 80221 Da PI: 6.5104

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT42863.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	77.1	3.4e-24	73	164	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHela 90 ++Y+++A++ GFsvrk++s++s++ g i++r+fvC+++g+++++kk+++++ r r++ r+gC+akl ++ke ++w+v+++++ HnHel PHT42863.1 73 EYYSNFARKNGFSVRKARSTESQNLG-IYRRDFVCYRSGFNQPRKKANVEHPRDRKSVRCGCDAKLYLTKEIadgVAQWYVSQFSNIHNHELL 164 69******************8888.**************************************998766789***********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 694 aa Download sequence
MEITAAKPFN NIWIRRQQCP CGDWKCYIKA DGDEQGANVS QTTKSEATSS SSQDIVFTPY 60 VGQIFKGDDE AFEYYSNFAR KNGFSVRKAR STESQNLGIY RRDFVCYRSG FNQPRKKANV 120 EHPRDRKSVR CGCDAKLYLT KEIADGVAQW YVSQFSNIHN HELLEDDQVR LLPAYRKIQE 180 ADQERILLLS KAGFPVNRIV KVLELEKGVQ PGQLPFIEKD VRNFVRTCKK TVQENDALIT 240 EKRENDLLDL LEGCKASEQK DEGFVYSFTT DENGRVENIA WSYGHSRQAY SFFGDVVTFD 300 TTYRSITYNM IFGVWFGIDN HGNVLFLGCV LLQDETSQSF TWALQSFVRF MRGRQPQTIV 360 TDIDSGIRDA IASEMPNTKH VISIWQVLSK LSSWFSLPLG LQYPDFKSEF DVLCRLENVE 420 DFEHQWNQLV ARFGLGSDKH IALLLSYRAS WPSSYMRNFF LARTMMIEYW KLVETYMKNI 480 LSPQSSLLLF FEQVGSASNV GSHKKEKQLY MPTKTCLPVE EHSRSILTPY AFNIMQHEIM 540 LSMQYAITEM ANSSYLVRHY KKMEAECLVI WIHEDEQVHC SCKEFEHSGI MCRHSIRVLV 600 SKNYFQIPEK YFPLRWRLES SLAPLDDSVI QSSENEYSQV FHALCGSLYS ESSISKQRFD 660 YVNRELKQLL EHVQNMPSVD EVAVSSAPIN VGEL

Sequence ? help Back to Top

Protein Sequence Length: 694 aa Download sequence

MEITAAKPFN NIWIRRQQCP CGDWKCYIKA DGDEQGANVS QTTKSEATSS SSQDIVFTPY  60
VGQIFKGDDE AFEYYSNFAR KNGFSVRKAR STESQNLGIY RRDFVCYRSG FNQPRKKANV  120
EHPRDRKSVR CGCDAKLYLT KEIADGVAQW YVSQFSNIHN HELLEDDQVR LLPAYRKIQE  180
ADQERILLLS KAGFPVNRIV KVLELEKGVQ PGQLPFIEKD VRNFVRTCKK TVQENDALIT  240
EKRENDLLDL LEGCKASEQK DEGFVYSFTT DENGRVENIA WSYGHSRQAY SFFGDVVTFD  300
TTYRSITYNM IFGVWFGIDN HGNVLFLGCV LLQDETSQSF TWALQSFVRF MRGRQPQTIV  360
TDIDSGIRDA IASEMPNTKH VISIWQVLSK LSSWFSLPLG LQYPDFKSEF DVLCRLENVE  420
DFEHQWNQLV ARFGLGSDKH IALLLSYRAS WPSSYMRNFF LARTMMIEYW KLVETYMKNI  480
LSPQSSLLLF FEQVGSASNV GSHKKEKQLY MPTKTCLPVE EHSRSILTPY AFNIMQHEIM  540
LSMQYAITEM ANSSYLVRHY KKMEAECLVI WIHEDEQVHC SCKEFEHSGI MCRHSIRVLV  600
SKNYFQIPEK YFPLRWRLES SLAPLDDSVI QSSENEYSQV FHALCGSLYS ESSISKQRFD  660
YVNRELKQLL EHVQNMPSVD EVAVSSAPIN VGEL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28530.1	0.0	FAR1 family protein