PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT42504.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

MYB

Protein Properties

Length: 214aa MW: 24800.5 Da PI: 9.5632

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT42504.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	57.3	3.5e-18	12	59	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg W +eEd++l+++v+ +G g+W+tI+++ g+ R++k+c++rw +yl PHT42504.1 12 RGFWKPEEDLILKNCVETHGEGNWATISEKSGLLRSGKSCRLRWKNYL 59 799***************************99**********97 PP
2	Myb_DNA-binding	49.8	7.6e-16	65	110	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg ++++E +l+++++k+lG++ W++Ia +++ gRt++++k++w+++l PHT42504.1 65 RGMMSEDEKDLIIRLHKLLGNR-WSLIAGRLP-GRTDNEVKNFWNTHL 110 6789****************.*****.**********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 214 aa Download sequence
MKDKEVKTRM KRGFWKPEED LILKNCVETH GEGNWATISE KSGLLRSGKS CRLRWKNYLR 60 PNIKRGMMSE DEKDLIIRLH KLLGNRWSLI AGRLPGRTDN EVKNFWNTHL NNKRSCKGKK 120 KHVKSKEANT HSPQGKTQQC PAETVRNQEV ATKTVLDSWI EEMQDFNCSL LSPVMNNMPF 180 LEDEPFIPIL DDIVLLEAFT STGKEAWSEI QTFL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G52600.1	3e-62	MYB family protein