PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT42406.1
Organism
Capsicum baccatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family B3
Protein Properties Length: 562aa    MW: 62602 Da    PI: 4.8122
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT42406.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B360.13.9e-19125225198
                 EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                 f+k lt sd +++  l++ ++ a ++       ++k+  ++l+ +d++g +W++++ ++++++r++ltkGW +Fv +++L +gD+v+F   + +++ l+
  PHT42406.1 125 FCKNLTASDINSNWGLTVRRDDAIKCfppldiTKEKPI-QELIATDLHGFEWQFTHVFQGQPRRHLLTKGWGKFVASKRLVVGDSVIFL--RGENGGLR 220
                 89****************************87434444.389***********************************************..3477779* PP

                 EEEE- CS
          B3  94 vkvfr 98 
                 v+++r
  PHT42406.1 221 VGIRR 225
                 *9997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 562 aa     Download sequence    
MDAITGSSHQ QQQQNHVLFQ GDNLYSELWK ACAGPMMDLP RPGERVFYFP MMHVELLKES  60
ADQIVPSFHL PSRILCRVIN IQLKVEPETD EVYTQITSLP EENQNDQTIP DALSPEPPTL  120
QFHSFCKNLT ASDINSNWGL TVRRDDAIKC FPPLDITKEK PIQELIATDL HGFEWQFTHV  180
FQGQPRRHLL TKGWGKFVAS KRLVVGDSVI FLRGENGGLR VGIRRCAHPS HNIGSSPVSS  240
QTVEGVLSVV SHAFAAGTLF SVYCQPRMSG CFLSLNKYLE QNKQNISNEN SAPVTSNGLC  300
TNQVSVNDLD CDVFSDIFLA PDSHFMKSTL QSNENDAGVP CTVQSFEEWP EIEIESLLTY  360
SLQLIPELST TTSTLMQPTD ALQMTCTYST TSQLSTEGSG CGGEVISWAG YQVAQQYVPI  420
LNRVIQRYPS TISGFKAITG DLQSAYLEML AKLVNLLEQS TIGNMDSRDQ SQVVEQYLAD  480
LKFIGIDISW IETRLGQVGE VLKKEKLIQY QHALAQRIEE TQCILGKLHV ELDSVKKEVD  540
ELTPKVGPNP PSKDCSILEG LL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59750.48e-97ARF family protein