PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT42010.1
Organism
Capsicum baccatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family GATA
Protein Properties Length: 354aa    MW: 39535.1 Da    PI: 8.0704
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT42010.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA33.84.8e-11194221835
        GATA   8 kTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                 +T++WR+gp  ++ LCnaCGl++r + +
  PHT42010.1 194 ETSNWRNGPPEKPVLCNACGLRWRTRQT 221
                 7********88888**********9865 PP
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    
MSDELNQVIR STLETSKLAD GELAKVIVEV NYKEGNTDAV FNALTDMAKD EHTKELLQRD  60
NTIDMPIVSQ RHRNAAAVSA SIHHTLYVIK LVSSSTFNLI SIGLIRNQIV WVKKDHVSIV  120
ASRISEIRRA LMYSLVCQLS ELVDCRSSGW GRWILADRWK QFNEKKKRAK VKERRKKEGL  180
GESTWLPVVV CGQETSNWRN GPPEKPVLCN ACGLRWRTRQ TLDGYIPKHA NGEIQKSQLP  240
SEMKPARDDQ KLEVGVRVSG QDGSSACLEV EMNNVLTIGS AGSASDNCIQ MEETNETDVS  300
ISGWDKMGNH NTRLHEMRKE IDALKGSMEG VASFVSKMGD IVDAKVVNAM AEIK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1166177KKRAKVKERRKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17570.32e-14GATA family protein