PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT41958.1
Organism
Capsicum baccatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family B3
Protein Properties Length: 818aa    MW: 92578.8 Da    PI: 8.9793
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT41958.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B336.11.2e-111852631498
                 T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
          B3  14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                 ++ ++p +f+++hg +     t++l  ++   W v +  +k++++++l +GW +F + + +    f++Fk+ ++s+f   v++f+
  PHT41958.1 185 QMKRIPDTFVQKHGDE--LLDTVKLIVPTDDFWCVGV--KKTGKMFWLHDGWHGFMEHHSVGCWYFLLFKYGQNSCF--SVHIFD 263
                 4568*********865..667****************..********************************999***..999987 PP
2B366.63.5e-21454542998
                 HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS...SEE..EEEEE- CS
          B3   9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr...sefelvvkvfr 98 
                 +vl++++l +p +f+++++ k  +s  + l+d++g++W+v+    +++ r++l++GW+eFv++n L +gD +vF+l+++   +++ l+v++fr
  PHT41958.1 454 NVLRNHILNIPADFVRDYMPK--TSGLIELQDSDGNKWNVRR--IRRKMRMILSRGWSEFVRDNSLVVGDACVFELIKDlqaHKRMLKVHIFR 542
                 6899**************855..4559***************..8999999************************997651244556677766 PP
3B364.12.2e-206577391196
                 HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEE CS
          B3  11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkv 96 
                  ++ +l +p  f+++++ k  +s +++led++g++W+v +i  +++  ++l+kGW +F+++ngL  gD++vF+l+++ +  el++kv
  PHT41958.1 657 VRNYILNIPPGFVQDYMPK--TSEQIKLEDSDGNKWNVHCI--RRKTCMFLSKGWVNFARDNGLVIGDTCVFELIKDiQADELMLKV 739
                 5667899*********855..5668***************4..44444679**********************99888777766554 PP
Sequence ? help Back to Top
Protein Sequence    Length: 818 aa     Download sequence    
MDGAHPVSTL MVVRSLDVNK YPFRPQQKNE ELLGPEIPYL SAIGALMYLA NTTRPDIAFS  60
VNFLVRLCVH MWGIVISWRS TKQCIIDTSS NHAEIIAIHE ASREAKRKEF ANDSSDSFSS  120
DDSDKDYMEE GEDEKEEDAK KALHSKCKHV EEEEDEEEEH KEVNEKADIF KKNASCSKVG  180
TDDVQMKRIP DTFVQKHGDE LLDTVKLIVP TDDFWCVGVK KTGKMFWLHD GWHGFMEHHS  240
VGCWYFLLFK YGQNSCFSVH IFDLAATEID YQFRSHGNAK LRDVAQDLSH RKDKIVGGKS  300
SVEIVDLLET EQGPENSAKS SELSHGAKRR KMASGRIKHL RCYETRGKTN KLYDDEQLLN  360
GEKLNISGIS LTEPLGGNFV RQSMKAPIHS AAATRDARIS FTGQQREKSV LHGSTDNRGE  420
RGRPRAAEAN RATNAAKMFK PENPHFMTTL GGCNVLRNHI LNIPADFVRD YMPKTSGLIE  480
LQDSDGNKWN VRRIRRKMRM ILSRGWSEFV RDNSLVVGDA CVFELIKDLQ AHKRMLKVHI  540
FRSRVEENST NLRTGSISEP TRSTGKNCTL QFNETKHTES SDPFEPASSD RTNHQTNTKS  600
SFTGQQWEKS VLRGSTNNRR KRGRPRLAEA NRANDAAKMF MSENPYFMVT LGEYNTVRNY  660
ILNIPPGFVQ DYMPKTSEQI KLEDSDGNKW NVHCIRRKTC MFLSKGWVNF ARDNGLVIGD  720
TCVFELIKDI QADELMLKVH IFRKKRGGYG FQSRLHYAQV RGQTFLKERG NDGTQRVSTC  780
LGLALVGGVG RVRAPYGSGP IKGGLRLSLS AIAFSAVG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1493499RIRRKMR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.15e-38B3 family protein