PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT41645.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

Trihelix

Protein Properties

Length: 390aa MW: 45031.6 Da PI: 6.2378

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT41645.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	67.4	2.8e-21	82	170	1	86
trihelix 1 rWtkqevlaLiearremeerlr.rg.klkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrt.sessstcpyfdqle 86 +Wt+++v++Li+a +++ e+ rg kk++W+++s +m+erg ++sp+qC++k+++lnk+++++++ +++t ++++++ ++++ ++ PHT41645.1 82 KWTDDMVKLLITALSYIVEDPLcRGvFVKKGKWRAISCVMAERGHHVSPQQCEDKFNDLNKKFRRLNQVLGRGTaCDVVENPVLLEMMD 170 7************9877766243259*******************************************5488898888888775 PP

Sequence ? help Back to Top
Protein Sequence Length: 390 aa Download sequence
MQVNHQLAGH PNQAPVVLMQ HAPQVMSLGI SNMEHIAQEM QLLDTVRFHR VEMPEAYHEG 60 LNDVREVSGH TEEKQPVYKR MKWTDDMVKL LITALSYIVE DPLCRGVFVK KGKWRAISCV 120 MAERGHHVSP QQCEDKFNDL NKKFRRLNQV LGRGTACDVV ENPVLLEMMD LSYELKEEVN 180 KILGSRQLFY EEMCSFNNRN RLFLPHDQEV QQSVYLAVRG NYKYELGSMS QDLPLKRKIR 240 GEERVSNMAC ASLDCTTMVD PCLVQDMPAK RKVGGEGRHL NMAHLSLNDA TASNQDPNVL 300 RPNSDGIHFS MNNEEKEVQD EHILPCLQKL EEQKRQIHAQ ILQLERQRFK FMSCCSEEDR 360 ELQEMMLDNE VIKLENEQLM LELKRGGASV

Sequence ? help Back to Top

Protein Sequence Length: 390 aa Download sequence

MQVNHQLAGH PNQAPVVLMQ HAPQVMSLGI SNMEHIAQEM QLLDTVRFHR VEMPEAYHEG  60
LNDVREVSGH TEEKQPVYKR MKWTDDMVKL LITALSYIVE DPLCRGVFVK KGKWRAISCV  120
MAERGHHVSP QQCEDKFNDL NKKFRRLNQV LGRGTACDVV ENPVLLEMMD LSYELKEEVN  180
KILGSRQLFY EEMCSFNNRN RLFLPHDQEV QQSVYLAVRG NYKYELGSMS QDLPLKRKIR  240
GEERVSNMAC ASLDCTTMVD PCLVQDMPAK RKVGGEGRHL NMAHLSLNDA TASNQDPNVL  300
RPNSDGIHFS MNNEEKEVQD EHILPCLQKL EEQKRQIHAQ ILQLERQRFK FMSCCSEEDR  360
ELQEMMLDNE VIKLENEQLM LELKRGGASV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76870.1	3e-66	Trihelix family protein